GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002595-TA|BGIBMGA002595-PA|undefined
         (174 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   1.2  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    22   2.9  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    22   2.9  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    22   2.9  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    22   2.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)

Query: 18 RGGGLRRARYRKELYHSVDGTVETDGLR 45
          R  G   A YRK L    DG V    LR
Sbjct: 44 RNNGEEEAYYRKHLLKDADGRVSCPVLR 71


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 24  RARYRKELYHSVDGTVETDGLRHLLNNTTYSKTPFCRNSYVKMAAV 69
           R+R  K +    + T+  +  ++  NN  Y+K  +   +Y++   +
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 24  RARYRKELYHSVDGTVETDGLRHLLNNTTYSKTPFCRNSYVKMAAV 69
           R+R  K +    + T+  +  ++  NN  Y+K  +   +Y++   +
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 24  RARYRKELYHSVDGTVETDGLRHLLNNTTYSKTPFCRNSYVKMAAV 69
           R+R  K +    + T+  +  ++  NN  Y+K  +   +Y++   +
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/46 (19%), Positives = 22/46 (47%)

Query: 24  RARYRKELYHSVDGTVETDGLRHLLNNTTYSKTPFCRNSYVKMAAV 69
           R+R  K +    + T+  +  ++  NN  Y+K  +   +Y++   +
Sbjct: 75  RSREPKIISSLSNNTIHNNNYKYNYNNNNYNKKLYYNINYIEQIPI 120


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 50  NTTYSKTPFCRNSYVKMAAVDSKL 73
           +TT S TP CR     +AA +  L
Sbjct: 92  STTTSVTPSCRRQRYNIAAANPLL 115


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 22  LRRARYRKELYHSVDGTVETDGLRHLLNNTTYSKTP 57
           LRR + R    +      +TDG +         +TP
Sbjct: 315 LRREKDRGSREYPTSNATDTDGTKERTEEVALDRTP 350


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,669
Number of Sequences: 429
Number of extensions: 2214
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 140,377
effective HSP length: 54
effective length of query: 120
effective length of database: 117,211
effective search space: 14065320
effective search space used: 14065320
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)