GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002594-TA|BGIBMGA002594-PA|IPR000850|Adenylate kinase,
IPR011769|Adenylate/cytidine kinase, N-terminal, IPR006259|Adenylate
kinase, subfamily, IPR007862|Adenylate kinase, lid region
         (242 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.7  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   3.7  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   8.6  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   8.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.6  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 2   APAAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEKY 42
           +P  +   L P  +PL I    L   G  K  Q P+L + Y
Sbjct: 232 SPVQSDVSLSPVHEPLLITTEKLAAEGQTKLPQQPKLFKPY 272


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 18   GIRAVLLGPPGSGKGTQAPRLKEKYCVCH 46
            G+ A   GP  +G+ T+A      Y +CH
Sbjct: 1656 GLNAKAPGPGQAGEYTRAAGFLAYYEICH 1684


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 156 HEEFHPPKKPMTDDVTGEALIKRSD 180
           HE  H  ++P + D+ G+A  +R D
Sbjct: 98  HERTHTDERPYSCDICGKA-FRRQD 121


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 154 SYHEEFHPPKKPMTDDVTGEALIK 177
           S H+  H P K   D   G  L+K
Sbjct: 103 SIHQHHHDPMKMSLDKSGGSDLLK 126


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 154 SYHEEFHPPKKPMTDDVTGEALIK 177
           S H+  H P K   D   G  L+K
Sbjct: 254 SIHQHHHDPMKMSLDKSGGSDLLK 277


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 154 SYHEEFHPPKKPMTDDVTGEALIK 177
           S H+  H P K   D   G  L+K
Sbjct: 313 SIHQHHHDPMKMSLDKSGGSDLLK 336


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,778
Number of Sequences: 317
Number of extensions: 2433
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 242
length of database: 114,650
effective HSP length: 55
effective length of query: 187
effective length of database: 97,215
effective search space: 18179205
effective search space used: 18179205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)