Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002594-TA|BGIBMGA002594-PA|IPR000850|Adenylate kinase,
IPR011769|Adenylate/cytidine kinase, N-terminal, IPR006259|Adenylate
kinase, subfamily, IPR007862|Adenylate kinase, lid region
(242 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0227 + 11934530-11934638,11937206-11937351,11937492-119376... 259 2e-69
12_01_0813 + 7475591-7475693,7476972-7477117,7477205-7477324,747... 252 2e-67
08_01_0066 - 455589-455687,455902-455976,456531-456677,457158-45... 152 3e-37
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 133 1e-31
04_04_1543 - 34270578-34270718,34271069-34271341,34271782-342719... 116 2e-26
03_01_0215 + 1696250-1696573,1697653-1697793,1698267-1698539,169... 111 5e-25
04_01_0026 - 354855-354876,355184-355248,355710-355817,356215-35... 95 6e-20
07_03_1324 - 25825153-25825197,25825705-25825785,25825907-258259... 83 1e-16
06_01_0718 + 5233030-5233062,5233329-5233383,5233543-5233660,523... 82 5e-16
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 81 8e-16
02_05_0942 + 32970537-32970581,32971059-32971113,32971300-329714... 78 7e-15
06_01_0067 + 561910-561987,562698-562759,564293-564338,564701-56... 77 1e-14
03_02_0466 - 8690469-8690522,8691008-8691113,8691216-8691457,869... 30 1.9
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435... 29 2.6
10_07_0162 - 13713504-13714754,13716445-13716522 29 2.6
11_06_0211 + 21305535-21305895,21306512-21306761,21307543-213076... 29 3.4
07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404... 29 4.5
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 28 5.9
06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681 28 5.9
05_07_0306 - 29108860-29109282,29109425-29110441 28 5.9
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 28 5.9
04_04_1659 - 35127145-35127204,35127324-35127464,35127597-351276... 28 7.9
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 28 7.9
>11_03_0227 +
11934530-11934638,11937206-11937351,11937492-11937611,
11937731-11937898,11938534-11938623,11938920-11939018
Length = 243
Score = 259 bits (634), Expect = 2e-69
Identities = 115/210 (54%), Positives = 157/210 (74%)
Query: 20 RAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSD 79
R +L+GPPGSGKGTQ+P +K++YC+CHL+TGDMLRA V++ + LG + K+ MD+G+LVSD
Sbjct: 32 RLILVGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDKGELVSD 91
Query: 80 EMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLV 139
++VV +ID+ + +P C+ GF+LDGFPRTV QA+KLD++L K+ T +D V+ F I+DS+L
Sbjct: 92 DLVVGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLEKKGTKVDKVLNFAIDDSILE 151
Query: 140 RRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVP 199
RITGR IHP SGRSYH +F PPK P DDVTGE LI+R DD E LK RL +H QT P
Sbjct: 152 ERITGRWIHPSSGRSYHTKFAPPKVPGVDDVTGEPLIQRKDDTAEVLKSRLEAFHKQTEP 211
Query: 200 LVDYYMRKGLHWRVDASKAADDVFNKIDNI 229
++DYY +K L + A K +V ++ +
Sbjct: 212 VIDYYSKKALVANLHAEKPPKEVTAEVQKV 241
>12_01_0813 +
7475591-7475693,7476972-7477117,7477205-7477324,
7477445-7477612,7478252-7478341,7478941-7479039
Length = 241
Score = 252 bits (617), Expect = 2e-67
Identities = 111/203 (54%), Positives = 153/203 (75%)
Query: 20 RAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSD 79
R +L+GPPG GKGTQ+P +K+++C+CHL+TGDMLRA V++ + LG + K+ MD+G+LVSD
Sbjct: 30 RVILVGPPGCGKGTQSPLIKDEFCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSD 89
Query: 80 EMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLV 139
++VV +ID+ + + C+ GF+LDGFPRTV QA+KLD++LAK+ T +D V+ F I+D++L
Sbjct: 90 DLVVGIIDEAMKKTSCQKGFILDGFPRTVVQAQKLDEMLAKQGTKIDKVLNFAIDDAILE 149
Query: 140 RRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVP 199
RITGR IHP SGRSYH +F PPK P DDVTGE LI+R DD LK RL +H QT P
Sbjct: 150 ERITGRWIHPSSGRSYHTKFAPPKTPGLDDVTGEPLIQRKDDTAAVLKSRLEAFHVQTKP 209
Query: 200 LVDYYMRKGLHWRVDASKAADDV 222
++DYY +KG+ + A K +V
Sbjct: 210 VIDYYTKKGIVANLHAEKPPKEV 232
>08_01_0066 -
455589-455687,455902-455976,456531-456677,457158-457292,
457380-457508,457719-457814,458212-458403
Length = 290
Score = 152 bits (368), Expect = 3e-37
Identities = 87/233 (37%), Positives = 134/233 (57%), Gaps = 13/233 (5%)
Query: 3 PAAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSD 62
P AA + DPL + ++ G P SGKGTQ +K KY + H+S GD+LRAE+++GS+
Sbjct: 60 PRAAKVVVAVKADPL--KVMIAGAPASGKGTQCELIKSKYGLVHISAGDLLRAEIAAGSE 117
Query: 63 LGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPEC-KNGFLLDGFPRTVPQAEKLDDLLAKR 121
G+R K+ M++G+LV DE+VV+M+ + L QP+ + G+LLDG+PR+ QA L+ L +
Sbjct: 118 NGKRAKEFMEKGQLVPDEIVVNMVKERLLQPDAQEKGWLLDGYPRSYSQAMALETLNIRP 177
Query: 122 KTALDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDD 181
D I + D LLV R+ GR + P +G+ YH ++ PP+ ++ L +R DD
Sbjct: 178 ----DIFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPE----NEEIASRLTQRFDD 229
Query: 182 NVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIFKSRI 234
E +K RL T++ L+ Y + + V DDVF +ID S +
Sbjct: 230 TEEKVKLRLQTHYQNVESLLSIY--EDVIVEVKGDALVDDVFAEIDKQLTSSL 280
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 133 bits (321), Expect = 1e-31
Identities = 81/223 (36%), Positives = 123/223 (55%), Gaps = 32/223 (14%)
Query: 4 AAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDL 63
AAAA K P ++ ++ G P SGKGTQ + EKY + H+STGD+LRAEVSSG+++
Sbjct: 81 AAAARKEAP------LKVMISGAPASGKGTQCRMIVEKYGLVHISTGDLLRAEVSSGTEI 134
Query: 64 GRRLKKVMDEGKLVSDEMVVDMIDKNLDQPECK-NGFLLDGFPRTVPQAEKLDDLLAKRK 122
G++ K+ MD G LV D++V DM+ L QP+ + G+LLDG+PR+ QA+ L+ + +
Sbjct: 135 GKKAKEYMDNGMLVPDQVVTDMVVSRLSQPDVRERGWLLDGYPRSYAQAQSLESMKIRPD 194
Query: 123 TALDAVIEF---------------------GIEDSLLVRRITGRLIHPPSGRSYHEEFHP 161
+ IE + D +L+ R GR + P +G+ YH + P
Sbjct: 195 IFIVLEIELYNQFIKFLVHENITGYFNNVSTVPDDILIDRCVGRRLDPETGKIYHIKNFP 254
Query: 162 PKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYY 204
P+ D+V+ L+ RSDD E +K RL TY + ++ Y
Sbjct: 255 PE---NDEVSAR-LVTRSDDTFEKVKSRLDTYKQNSEAVIPTY 293
>04_04_1543 -
34270578-34270718,34271069-34271341,34271782-34271922,
34272365-34272667
Length = 285
Score = 116 bits (278), Expect = 2e-26
Identities = 73/222 (32%), Positives = 117/222 (52%), Gaps = 22/222 (9%)
Query: 2 APAAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGS 61
A A + + +ED ++ V LG PG GKGT A RL + V H++TGD++R ++S
Sbjct: 37 AVARRGREREREEDGRRVQWVFLGCPGVGKGTYASRLSQMLRVPHIATGDLVRDALASPG 96
Query: 62 DLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPECKN--GFLLDGFPRTVPQAEKLDDLLA 119
+L ++++ GKLVSDE++++++ K L++ K GF+LDGFPRT+ QAE L+ +
Sbjct: 97 PFSEQLAEIVNNGKLVSDEIIINLLSKRLEEGAEKGELGFILDGFPRTIRQAEILEGV-- 154
Query: 120 KRKTALDAVIEFGIEDSLLVRRITGRLIHPPSGRSYH-------------EEFHPPKKPM 166
T +D VI + + L+ + GR + G +++ + PP P
Sbjct: 155 ---TDIDLVINLKLREEALLAKCLGRRMCSQCGGNFNVASIDMEGENGGPRMYMPPLLPP 211
Query: 167 TDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYMRKG 208
LI R DD E +K+RL YH P+ D+Y +G
Sbjct: 212 PQ--CESKLITRPDDTEEVVKERLRVYHDLCEPVEDFYRARG 251
>03_01_0215 +
1696250-1696573,1697653-1697793,1698267-1698539,
1698755-1698814,1698890-1699033
Length = 313
Score = 111 bits (267), Expect = 5e-25
Identities = 72/204 (35%), Positives = 115/204 (56%), Gaps = 18/204 (8%)
Query: 4 AAAATKLKPDEDPLGIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDL 63
AAA + + ++ V LG PG GKGT A RL V H++TGD++R E++S L
Sbjct: 46 AAAGRARQRVAEERNVQWVFLGCPGVGKGTYASRLSRLLGVPHIATGDLVRDELASSGPL 105
Query: 64 GRRLKKVMDEGKLVSDEMVVDMIDKNLDQPE--CKNGFLLDGFPRTVPQAEKLDDLLAKR 121
+L +++++GKLVSDE++++++ K L + E ++GF+LDGFPRTV QAE LD +
Sbjct: 106 SVQLAEIVNQGKLVSDEIIINLLSKRLKKGEEQGESGFILDGFPRTVKQAEILDGV---- 161
Query: 122 KTALDAVIEFGIEDSLLVRRITGRLIHPPSGRSYH--------EEFHPP--KKP-MTDDV 170
T +D V+ + + +LV + GR I G++++ E PP P + +
Sbjct: 162 -TDIDMVVNLKLREDVLVEKCLGRRICGQCGKNFNLACIDVKGENGLPPIYMAPLLPPNN 220
Query: 171 TGEALIKRSDDNVEALKKRLATYH 194
LI R+DD E ++ RL Y+
Sbjct: 221 CMSKLITRADDTEEVVRNRLQIYN 244
>04_01_0026 -
354855-354876,355184-355248,355710-355817,356215-356295,
356729-356885,356990-357107,357485-357533,357806-357901
Length = 231
Score = 94.7 bits (225), Expect = 6e-20
Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 33/212 (15%)
Query: 21 AVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDE 80
A +LG PGSGKGTQ R+ + HLS GD+LR+E+S+G + G + ++ EGK+V E
Sbjct: 45 AFVLGGPGSGKGTQCVRIASDFGFAHLSAGDLLRSEISTGGEKGELILNIIKEGKIVPSE 104
Query: 81 MVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVR 140
+ V++I K ++ + K L+DGFPR + + T D VI F + +V+
Sbjct: 105 ITVELIRKAMESSDAKR-VLIDGFPRCEENRIAFERITG---TEPDLVIFFDCPEDEMVK 160
Query: 141 RITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPL 200
R+ GR GR + D++ E + KR L + + +P+
Sbjct: 161 RLLGR----NQGR------------VDDNI--ETIKKR-----------LKVFESLNIPV 191
Query: 201 VDYYMRKGLHWRVDASKAADDVFNKIDNIFKS 232
VDYY +G +++A+ +++F + +F S
Sbjct: 192 VDYYTSRGKVHKINATGTEEEIFGAVHKLFSS 223
>07_03_1324 -
25825153-25825197,25825705-25825785,25825907-25825967,
25826005-25826060,25826171-25826239,25826366-25826473,
25826555-25826635,25826795-25826951,25827060-25827177,
25827285-25827339,25827779-25827814
Length = 288
Score = 83.4 bits (197), Expect = 1e-16
Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 4/123 (3%)
Query: 23 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 82
+LG PGSGKGTQ + E + HLS GD+LRAE+ SGS+ G ++ ++ EGK+V E+
Sbjct: 29 VLGGPGSGKGTQCANIVEHFGFTHLSAGDLLRAEIKSGSENGTMIENMIKEGKIVPSEVT 88
Query: 83 VDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLLVRRI 142
+ ++ + + E + FL+DGFPR +++ K + V+ F + + RR+
Sbjct: 89 IKLLQDAMIKNE-NDKFLIDGFPRNEENRAAFENV---TKISPAFVLFFDCSEEEMERRL 144
Query: 143 TGR 145
GR
Sbjct: 145 LGR 147
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 178 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 230
R DDN+E ++KR + ++P++++Y K ++DA+K +VF + IF
Sbjct: 151 RVDDNIETIRKRFKVFVESSLPVIEHYNAKNKVKKIDAAKPISEVFEDVKAIF 203
>06_01_0718 +
5233030-5233062,5233329-5233383,5233543-5233660,
5233746-5233902,5234033-5234113,5234213-5234320,
5234448-5234483
Length = 195
Score = 81.8 bits (193), Expect = 5e-16
Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 37/211 (17%)
Query: 3 PAAAATKLKPDEDPLGIRAV----LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVS 58
P K +E+ LG + V +LG PGSGKGTQ + E + HLS G++LRAE++
Sbjct: 4 PDVLTEKKDINENMLGGKKVKIIFVLGGPGSGKGTQCSNIVEHFGFIHLSAGELLRAEIN 63
Query: 59 SGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLL 118
SGS+ G + ++ EGK+V E+ + ++ + + + + +++DGFPR + ++
Sbjct: 64 SGSENGTMIDTIITEGKIVPSEITIKLLQEAIIKGG-NDKYIIDGFPRNEENRVVFESVI 122
Query: 119 AKRKTALDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKR 178
+ + + V+ F + + RR+ GR GRS DD
Sbjct: 123 S---ISPEFVLFFDCSEEEMERRLLGR----NQGRS-------------DD--------- 153
Query: 179 SDDNVEALKKRLATYHAQTVPLVDYYMRKGL 209
N+E ++KRL + ++P+++YY KG+
Sbjct: 154 ---NIETIRKRLKVFVESSLPVIEYYESKGM 181
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 81.0 bits (191), Expect = 8e-16
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 7/140 (5%)
Query: 18 GIRAVLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLV 77
G + V++G PG K A RL E V ++S G ++R E+S S L +++ ++EGKLV
Sbjct: 70 GPQWVVMGRPGPQKHAHAARLAEVLAVPYISMGTLVRQELSPASSLYKKIANSVNEGKLV 129
Query: 78 SDEMVVDMIDKNLDQPECK--NGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIED 135
++++ ++ K L++ K GF+LDG PRT QAE LD+++ +D V+ F D
Sbjct: 130 PEDIIFGLLTKRLEEGYNKGETGFILDGIPRTHMQAEILDEIV-----DIDLVLNFKCAD 184
Query: 136 SLLVRRITGRLIHPPSGRSY 155
+ ++R G I P G+ +
Sbjct: 185 NCFMKRRFGGDICPHCGQLF 204
>02_05_0942 +
32970537-32970581,32971059-32971113,32971300-32971417,
32971567-32971615,32971637-32971723,32971890-32971970,
32972074-32972181,32972432-32972503,32973218-32973250
Length = 215
Score = 77.8 bits (183), Expect = 7e-15
Identities = 71/233 (30%), Positives = 111/233 (47%), Gaps = 44/233 (18%)
Query: 2 APAAAATKLKPDEDPLGIRAV----LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEV 57
AP A + + ++ LG + V +LG PGSGKGTQ + E + HLS GD+LRAE+
Sbjct: 7 APTVVAGQEEVTDNMLGDKKVTVVFVLGGPGSGKGTQCANIVEHFGFIHLSAGDLLRAEI 66
Query: 58 SSGSDLGRRLKKVMDEGKLVSDEMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDL 117
SGS+ G ++ ++ EGK+V E MI D+ FL+DGFPR +++
Sbjct: 67 KSGSENGTMIENMIKEGKIVPSEEA--MIKSGNDK------FLIDGFPRNEENRAAFENV 118
Query: 118 LAKRKTALDAVIEFGIEDSLLVRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIK 177
K V+ F + + RR+ GR GR + D++ E + K
Sbjct: 119 ---TKITPAFVLFFDCSEEEMERRLLGR----NQGR------------VDDNI--ETIRK 157
Query: 178 RSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 230
R VE+ ++P+++YY K ++DA+K +VF + IF
Sbjct: 158 RFKVFVES-----------SLPVIEYYNAKDKVKKIDAAKPIPEVFEDVKAIF 199
>06_01_0067 +
561910-561987,562698-562759,564293-564338,564701-564758,
564892-565009,565130-565286,565611-565718,565884-565955,
566058-566174,566309-566404
Length = 303
Score = 77.0 bits (181), Expect = 1e-14
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 23 LLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEMV 82
++G PGSGKGTQ ++ +++ HLS GD+LR E ++ G +K +M+EGKLVS +++
Sbjct: 80 VIGGPGSGKGTQCAKIVKQFGFTHLSAGDLLREEAKYDTEQGTMIKNLMNEGKLVSSDLI 139
Query: 83 VDMIDKNLDQPECKNGFLLDGFPR 106
V ++ K + + + FL+DGFPR
Sbjct: 140 VKLLFKAM-RESGNDKFLVDGFPR 162
Score = 51.6 bits (118), Expect = 6e-07
Identities = 19/55 (34%), Positives = 35/55 (63%)
Query: 176 IKRSDDNVEALKKRLATYHAQTVPLVDYYMRKGLHWRVDASKAADDVFNKIDNIF 230
I R DDN++ +++R + QT+P++ YY ++G +VD ++ D+VF + IF
Sbjct: 173 IGRDDDNIDTIRRRFDVFQQQTLPVIQYYEKRGKLRKVDGNRQVDEVFEDVKAIF 227
>03_02_0466 -
8690469-8690522,8691008-8691113,8691216-8691457,
8691477-8691546,8692224-8692499,8693058-8693137,
8693408-8693489,8693566-8693663,8693868-8693936,
8694015-8694113,8694681-8694737,8694874-8695039,
8695152-8695196,8695286-8695347,8695425-8695532,
8695719-8695769,8695843-8695944,8696362-8696448,
8696560-8696823,8696977-8697189,8697337-8697398,
8697517-8697849,8697943-8698138
Length = 973
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 22 VLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDE- 80
+L GPPG GK T A + K+C H+ ++ ++ S S + ++ V+ ++SD
Sbjct: 359 LLCGPPGLGKTTLA-HVAAKHCGYHVV--EINASDDRSASSIEPKILDVIQMNSIMSDSK 415
Query: 81 ---MVVDMID 87
+V+D ID
Sbjct: 416 PKCLVIDEID 425
>11_06_0066 -
19741883-19742263,19743001-19743231,19743378-19743530,
19743667-19743726,19743806-19743874,19744639-19744719,
19744818-19744920,19745392-19745534,19745621-19745683,
19745803-19745870,19745974-19746055,19746147-19746260,
19746362-19746570,19746647-19746818
Length = 642
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 170 VTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYMRKGLH 210
+T AL+KR +E L+K+L H++ + V R +H
Sbjct: 347 LTDAALLKRQKQEIEELRKKLQGSHSEVLEQVILKQRNDMH 387
>10_07_0162 - 13713504-13714754,13716445-13716522
Length = 442
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 26 PPGSGKGTQAPRLKEKYCVCHLSTG 50
PPG+G +AP ++ C C L TG
Sbjct: 15 PPGAGVRVRAPLVESVSCYCRLDTG 39
>11_06_0211 +
21305535-21305895,21306512-21306761,21307543-21307652,
21308836-21309067,21310233-21310603,21311434-21311507,
21311727-21311880,21312251-21312434,21313066-21313291,
21313704-21314135,21314399-21314456,21314748-21314829,
21315350-21315421,21316594-21316737,21317379-21317457,
21318023-21318105,21318198-21318252,21318488-21318778
Length = 1085
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 159 FHPPKKPMTDDVTGEALIKRSDDNVEALKKRLATYHAQTVPLVDYYM 205
F ++ + D V AL K + DNV A+ L ++++ V L D+YM
Sbjct: 374 FAVTQRNLADYVVDLALEKGTTDNVAAVIVPLGSHYSSKVTLEDWYM 420
>07_03_1713 +
28939446-28939574,28939674-28940231,28940338-28940460,
28940676-28940912
Length = 348
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 13 DEDPLGIRAVLLGPPGSGKGTQAPR 37
DE G R +GPPG+G G + PR
Sbjct: 166 DEPGYGYRPPPVGPPGAGYGNRLPR 190
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 16 PLGIRAVLLGPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEG 74
P GI +L GPPGSGK A + E L G + ++++ S+ L+K +E
Sbjct: 244 PKGI--LLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESE--SNLRKAFEEA 299
Query: 75 KLVSDEMV-VDMIDKNLDQPECKNG 98
+ + ++ +D ID + E NG
Sbjct: 300 EKNAPSIIFIDEIDSIAPKREKTNG 324
>06_01_1161 - 9872947-9873800,9874187-9874331,9874628-9874681
Length = 350
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 15 DPLGIRAVLLGPP--GSGKGTQAPRLKEKYCVCHLST 49
+P + AV+L GSG G+ P E VCHL T
Sbjct: 263 NPTRVYAVVLESEEDGSGSGSGTPEKMEALAVCHLDT 299
>05_07_0306 - 29108860-29109282,29109425-29110441
Length = 479
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 22 VLLGPPGSGKGTQAPRLKEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDEM 81
+L GPPG+GK + + D+ EV S SDL R L + + LV +++
Sbjct: 254 LLYGPPGTGKSSLIAAMAN---YLKFDIYDLELTEVKSNSDLRRLLVGMSNRSILVVEDI 310
Query: 82 VVDMIDKNLDQPECK 96
+ + D+ E K
Sbjct: 311 DCTIDLQQRDEGEIK 325
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 22 VLLGPPGSGKGTQAPRL-KEKYCVCHLSTGDMLRAEVSSGSDLGRRLKKVMDEGKLVSDE 80
+ L P G G G + RL + +GD+LR+ V S +G +V + + D+
Sbjct: 9 ISLRPGGGGGGPRPGRLFSPAFAAAASGSGDLLRSHVGGASKIGDPNFEVRERVRYTRDQ 68
Query: 81 MV 82
++
Sbjct: 69 LL 70
>04_04_1659 -
35127145-35127204,35127324-35127464,35127597-35127647,
35127757-35127837,35128229-35128324,35128393-35128568,
35130088-35130176,35130255-35130362,35130673-35130809,
35131023-35131073,35131264-35131310,35131477-35131544,
35132161-35132262,35132556-35132735,35132821-35133059
Length = 541
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 82 VVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAK 120
V ++I ++D+P+ NGF LD F E+ D LL K
Sbjct: 182 VHEIIFSSIDKPKLLNGFCLDVFVVDGWDTEETDGLLQK 220
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 1 MAPAAAATKLKPDEDPLGIRAVLLGPPGSGKGT 33
MA AA A L + G+R V++G PG+GK +
Sbjct: 1 MAAAATAANLAGKQ---GVRVVVIGDPGTGKSS 30
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,857,867
Number of Sequences: 37544
Number of extensions: 356305
Number of successful extensions: 1022
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 988
Number of HSP's gapped (non-prelim): 29
length of query: 242
length of database: 14,793,348
effective HSP length: 80
effective length of query: 162
effective length of database: 11,789,828
effective search space: 1909952136
effective search space used: 1909952136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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