GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002594-TA|BGIBMGA002594-PA|IPR000850|Adenylate kinase,
IPR011769|Adenylate/cytidine kinase, N-terminal, IPR006259|Adenylate
kinase, subfamily, IPR007862|Adenylate kinase, lid region
         (242 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 79  DEMVVDMIDKNLDQPECKNGFLLDGFPRTVPQAEKLDDLLAKRKTALDAVIEFGIEDSLL 138
           D   V+++D   D  E     + D       +   LDD +++      AVI   + D L+
Sbjct: 119 DVTTVELVDAT-DPGEHNGDTVTDVEAGLASRTNPLDDSISQANEGFCAVIS--MHDGLV 175

Query: 139 ------VRRITGRLIHPPSGRSYHEEFHPPKKPMTDDVTGEALIKRSDDNVEALKKRLAT 192
                 +    G L     GRS+ +  HP  K    D     ++   ++  + +  R A+
Sbjct: 176 LYTTPSICTALGYLKDAWIGRSFIDYVHPKDKATLADQIKNGIVSPQEERPKGINGRRAS 235


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,283
Number of Sequences: 429
Number of extensions: 2757
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 1
length of query: 242
length of database: 140,377
effective HSP length: 56
effective length of query: 186
effective length of database: 116,353
effective search space: 21641658
effective search space used: 21641658
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)