GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002593-TA|BGIBMGA002593-PA|IPR002471|Peptidase S9,
serine active site, IPR002470|Peptidase S9A, prolyl oligopeptidase,
IPR004106|Peptidase S9A, prolyl oligopeptidase, N-terminal
beta-propeller, IPR001375|Peptidase S9, prolyl oligopeptidase active
site region
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    31   0.21 
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   4.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   6.1  

>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 11/142 (7%)

Query: 122 EAKQIFYSSKDGTKVPMFIISKKDLPRDGSNPVLLYGYGGFNINVQPGFSVTRLVFMQHM 181
           E ++I   ++D   +  +++ + + P   S P LLY +     N+     + R VF   +
Sbjct: 61  EYERIELRTRDKVTLDSYLMLQSESPE--SRPTLLYFHANAG-NMGHRLPIAR-VFYSAL 116

Query: 182 NGIVAIPNIRGGGEYGERWHNAGRLLNKQNVFDDFQAAAEYMVSERYTRPALLTIQGGSN 241
           N  V I + RG G+       AG  +       D Q A EY++         + + G S 
Sbjct: 117 NMNVFIISYRGYGKSTGSPSEAGLKI-------DSQTALEYLMEHPICSKTKIVVYGQSI 169

Query: 242 GGLLVAACINQRPDLYGAAVVQ 263
           GG +  A   +  D   A +++
Sbjct: 170 GGAVAIALTAKNQDRISALILE 191


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 158  GYGGFNINVQPGFSVTRLVFMQHMNGIVA-IPNIRGGGEY 196
            G  GF++N   GF+++ LVF++  N I+  I N R   EY
Sbjct: 1114 GLVGFSLNSAIGFNISVLVFVRANNEILTYINNFRRLYEY 1153


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 83   HFMSFLTPGVIYHVDFKQKPYTPKVFREVTVKGFDASQYEAKQIFYSSKDGTKVPMFIIS 142
            HF +        H++F++K +    F ++ VK    S    K I     D   + +F   
Sbjct: 1057 HFSTVCLYSANMHMEFREKFFLQARFYDLEVKNHMKSNNPPKTIV--KIDDNDLFIFKYE 1114

Query: 143  KKDLPRDGSNP 153
              D+P+D S P
Sbjct: 1115 SYDIPKDISKP 1125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,921
Number of Sequences: 5004
Number of extensions: 87236
Number of successful extensions: 196
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 3
length of query: 396
length of database: 2,362,478
effective HSP length: 74
effective length of query: 322
effective length of database: 1,992,182
effective search space: 641482604
effective search space used: 641482604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)