GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002593-TA|BGIBMGA002593-PA|IPR002471|Peptidase S9,
serine active site, IPR002470|Peptidase S9A, prolyl oligopeptidase,
IPR004106|Peptidase S9A, prolyl oligopeptidase, N-terminal
beta-propeller, IPR001375|Peptidase S9, prolyl oligopeptidase active
site region
         (396 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-5|AAC46639.1|  629|Caenorhabditis elegans Dipeptidyl pept...    50   3e-06
L23648-15|AAM48526.1|  511|Caenorhabditis elegans Dipeptidyl pep...    42   6e-04
L23648-13|AAM48525.1|  740|Caenorhabditis elegans Dipeptidyl pep...    42   6e-04
L23648-14|AAM48527.1|  573|Caenorhabditis elegans Dipeptidyl pep...    37   0.022
AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl p...    37   0.029
AF043699-7|AAK84627.1|  927|Caenorhabditis elegans Dipeptidyl pe...    34   0.15 
AF043699-6|AAB97564.1|  931|Caenorhabditis elegans Dipeptidyl pe...    34   0.15 
AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans Phosphodieste...    30   3.3  
AC024877-3|AAF60898.1|  760|Caenorhabditis elegans Phosphodieste...    30   3.3  
AL009246-1|CAA15835.1|  281|Caenorhabditis elegans Hypothetical ...    29   7.6  

>U13070-5|AAC46639.1|  629|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 4 protein.
          Length = 629

 Score = 50.0 bits (114), Expect = 3e-06
 Identities = 79/348 (22%), Positives = 136/348 (39%), Gaps = 34/348 (9%)

Query: 52  LKTGEFIQTFPLDVGSVVGFTG-KKNQTEIFYHFMSFLTPGVIYHVDFKQKPYTPKVFRE 110
           +++G+     P    +V G+    +N +++F           +  +D   K +  KV RE
Sbjct: 296 VRSGDVTVEIPTPGYTVFGYLSLDQNGSDLFAIASGPKRASSVISIDLANKNFPLKVHRE 355

Query: 111 VTVKG-FDASQYEAKQIFYSSKDGTKVPMFIISKKDLPRDGSNPVLLYGYGGFNINVQPG 169
                  DA +    + F    DG  V     S   LP     PVLL G+GG     Q  
Sbjct: 356 SRDSSEIDALEISEPEEFVFKSDGVDV-----SAGTLP-----PVLLLGHGGPTAPAQNN 405

Query: 170 FSVTRLVFMQHMNGIVAIPNIRGGGEYGERWHNAGRLLNKQNVF---DDFQAAAEYMVSE 226
             + +  F      +  + N RG   +G  +    R+L K       DD    A+ +V +
Sbjct: 406 LDLKKQFFTSRGIAVFDV-NYRGSTGFGTEFR---RMLYKNCGVADRDDMLNGAKALVEQ 461

Query: 227 RYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIGHAWVSDYG 286
                  + I G S+GG L+ +C+    ++  AAV   GV D+L   + T  H     Y 
Sbjct: 462 GKVDAEKVLITGSSSGGYLILSCLISPKNIIKAAVSVYGVADLLALDEDT--HKLERCY- 518

Query: 287 SSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATLILSADHDDRVVPLHSLKFVAELQHVA 346
              N+       + + ++  + P  +  +    +      +D VVP+     + E    +
Sbjct: 519 ---NEMLIGKYPEQASIYEERSPIYHIDKIRTPIAFLHGREDTVVPMSQSITMYEKIRAS 575

Query: 347 GRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEHTD-ILCFMTQALGLK 393
           G + A     L  FD   G G G    ++I E T+    F+ +A+G++
Sbjct: 576 GVTTA-----LMLFD---GEGHGFRNGQVIKESTEATFYFLMKAVGIE 615


>L23648-15|AAM48526.1|  511|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 6, isoform b protein.
          Length = 511

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 16/237 (6%)

Query: 159 YGGFNINVQPGFSVTRLVFMQHMNGIVAIPNIRGGGEYGERWHNAGRLLNKQNVFDDFQA 218
           +GG       GFS            ++ + N RG   +G+R  NAG     + +  D   
Sbjct: 207 HGGPKARDHYGFSPMNAWLTNRGYSVLQV-NFRGSTGFGKRLTNAGNGEWGRKMHFDILD 265

Query: 219 AAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIG 278
           A E+ VS+     + + + GGS GG      +   P  +   V  VG  +++   +  I 
Sbjct: 266 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ-AIP 324

Query: 279 HAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPS----ENRPEYPATLILSADHDDRVVPLH 334
             W+  +     K     +       ++Q  S     +R   P  +I  A +D RV    
Sbjct: 325 PYWLG-FRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGA-NDPRVKQAE 382

Query: 335 SLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEHTDILCFMTQALG 391
           S +FVA L+        +  P+        GHG  KP    +++H  I  F+ Q LG
Sbjct: 383 SDQFVAALE-------KKHIPVTYLLYPDEGHGVRKPQNS-MEQHGHIETFLQQCLG 431


>L23648-13|AAM48525.1|  740|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 6, isoform a protein.
          Length = 740

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 16/237 (6%)

Query: 159 YGGFNINVQPGFSVTRLVFMQHMNGIVAIPNIRGGGEYGERWHNAGRLLNKQNVFDDFQA 218
           +GG       GFS            ++ + N RG   +G+R  NAG     + +  D   
Sbjct: 436 HGGPKARDHYGFSPMNAWLTNRGYSVLQV-NFRGSTGFGKRLTNAGNGEWGRKMHFDILD 494

Query: 219 AAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDMLRFQKFTIG 278
           A E+ VS+     + + + GGS GG      +   P  +   V  VG  +++   +  I 
Sbjct: 495 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLISLVQ-AIP 553

Query: 279 HAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPS----ENRPEYPATLILSADHDDRVVPLH 334
             W+  +     K     +       ++Q  S     +R   P  +I  A +D RV    
Sbjct: 554 PYWLG-FRKDLIKMVGADISDEEGRQSLQSRSPLFFADRVTKPIMIIQGA-NDPRVKQAE 611

Query: 335 SLKFVAELQHVAGRSPAQRAPLLARFDTKAGHGGGKPTTKIIDEHTDILCFMTQALG 391
           S +FVA L+        +  P+        GHG  KP    +++H  I  F+ Q LG
Sbjct: 612 SDQFVAALE-------KKHIPVTYLLYPDEGHGVRKPQNS-MEQHGHIETFLQQCLG 660


>L23648-14|AAM48527.1|  573|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 6, isoform c protein.
          Length = 573

 Score = 37.1 bits (82), Expect = 0.022
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 1/112 (0%)

Query: 159 YGGFNINVQPGFSVTRLVFMQHMNGIVAIPNIRGGGEYGERWHNAGRLLNKQNVFDDFQA 218
           +GG       GFS            ++ + N RG   +G+R  NAG     + +  D   
Sbjct: 436 HGGPKARDHYGFSPMNAWLTNRGYSVLQV-NFRGSTGFGKRLTNAGNGEWGRKMHFDILD 494

Query: 219 AAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVVQVGVLDML 270
           A E+ VS+     + + + GGS GG      +   P  +   V  VG  +++
Sbjct: 495 AVEFAVSKGIANRSEVAVMGGSYGGYETLVALTFTPQTFACGVDIVGPSNLI 546


>AF100669-11|AAK39270.2|  737|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 5 protein.
          Length = 737

 Score = 36.7 bits (81), Expect = 0.029
 Identities = 46/203 (22%), Positives = 81/203 (39%), Gaps = 7/203 (3%)

Query: 146 LPRDGSN-PVLLYGYGGFNINVQPGFSVTRLVFMQHMNGIVAIPNIRGGGEYGERWHNA- 203
           +P +G+N P+++  +GG +      +    L  + +    V   N RG   +G+ +  A 
Sbjct: 496 VPNEGNNLPMVVNPHGGPHGASMASWPRRDLTTLLNSGYAVLQVNFRGSLGFGDDFIRAL 555

Query: 204 -GRLLNKQNVFDDFQAAAEYMVSERYTRPALLTIQGGSNGGLLVAACINQRPDLYGAAVV 262
            G      +V D   A    +          + + GGS+GG LV+  I Q P  Y + V 
Sbjct: 556 PGNC-GDMDVKDVHNAVLTVLDKNPRISRDKVVLFGGSHGGFLVSHLIGQYPGFYKSCVA 614

Query: 263 QVGVLDMLRFQKFTIGHAWVSDYGSSD--NKTQFEYLLKYSPLHNIQPPSENRPEYPATL 320
              V+++      T    W    G+ +  + T+     +   + N  P +         L
Sbjct: 615 LNPVVNIATMHDITDIPEWCYFEGTGEYPDWTKITTTEQREKMFNSSPIAHVENATTPYL 674

Query: 321 ILSADHDDRVVPLHSLKFVAELQ 343
           +L  + D RVVP H   F+  L+
Sbjct: 675 LLIGEKDLRVVP-HYRAFIRALK 696


>AF043699-7|AAK84627.1|  927|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 3, isoform b protein.
          Length = 927

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 127 FYSSKDGTKVPMFIISKKDLPRDGSNPVLLYGYGGFNIN-VQPGFSVTRLVFMQHMNGIV 185
           F S K G      I+   +       PV  Y YGG  I  V   FS  + +    +  +V
Sbjct: 664 FQSKKTGLMHYAMILRPSNFDPYKKYPVFHYVYGGPGIQIVHNDFSWIQYIRFCRLGYVV 723

Query: 186 AIPNIRGGGEYG-ERWHNAGRLLNKQNVFDDFQAAAEYMVSER---YTRPALLTIQGGSN 241
              + RG    G E   +  + +    V D  Q     M++ER   +   + + + G S 
Sbjct: 724 VFIDNRGSAHRGIEFERHIHKKMGTVEVED--QVEGLQMLAERTGGFMDMSRVVVHGWSY 781

Query: 242 GGLLVAACINQRPDLYGAAVVQVGVLD 268
           GG +    I + P++Y AA+    V D
Sbjct: 782 GGYMALQMIAKHPNIYRAAIAGGAVSD 808


>AF043699-6|AAB97564.1|  931|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 3, isoform a protein.
          Length = 931

 Score = 34.3 bits (75), Expect = 0.15
 Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 127 FYSSKDGTKVPMFIISKKDLPRDGSNPVLLYGYGGFNIN-VQPGFSVTRLVFMQHMNGIV 185
           F S K G      I+   +       PV  Y YGG  I  V   FS  + +    +  +V
Sbjct: 668 FQSKKTGLMHYAMILRPSNFDPYKKYPVFHYVYGGPGIQIVHNDFSWIQYIRFCRLGYVV 727

Query: 186 AIPNIRGGGEYG-ERWHNAGRLLNKQNVFDDFQAAAEYMVSER---YTRPALLTIQGGSN 241
              + RG    G E   +  + +    V D  Q     M++ER   +   + + + G S 
Sbjct: 728 VFIDNRGSAHRGIEFERHIHKKMGTVEVED--QVEGLQMLAERTGGFMDMSRVVVHGWSY 785

Query: 242 GGLLVAACINQRPDLYGAAVVQVGVLD 268
           GG +    I + P++Y AA+    V D
Sbjct: 786 GGYMALQMIAKHPNIYRAAIAGGAVSD 812


>AC024877-4|ABQ13047.1|  697|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoformb protein.
          Length = 697

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 264 VGVLDMLRFQKFT-IGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 320
           V +   L  ++F  + HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 590 VNIFSSLSREEFIQMRHAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>AC024877-3|AAF60898.1|  760|Caenorhabditis elegans
           Phosphodiesterase protein 6, isoforma protein.
          Length = 760

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 264 VGVLDMLRFQKFT-IGHAWVSDYGSSDNKTQFEYLLKYSPLHNIQPPSENRPEYPATL 320
           V +   L  ++F  + HA V    ++D    FEYL K++ +H    P E R     T+
Sbjct: 590 VNIFSSLSREEFIQMRHAMVEMVLATDISRHFEYLAKFNKMHVTDVPEEQRDTNSLTI 647


>AL009246-1|CAA15835.1|  281|Caenorhabditis elegans Hypothetical
           protein C47F8.1 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 99  KQKPYTPKVFRE-VTVKGFDASQYEAKQIFYSSKDGTK 135
           K  P+  K   E V +KG D    E K+IF   KDG K
Sbjct: 212 KLGPFWKKQANEKVVLKGIDVESVEKKRIFKVKKDGIK 249


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,850
Number of Sequences: 27539
Number of extensions: 465112
Number of successful extensions: 832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 10
length of query: 396
length of database: 12,573,161
effective HSP length: 83
effective length of query: 313
effective length of database: 10,287,424
effective search space: 3219963712
effective search space used: 3219963712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)