GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002592-TA|BGIBMGA002592-PA|IPR002470|Peptidase S9A,
prolyl oligopeptidase, IPR004106|Peptidase S9A, prolyl oligopeptidase,
N-terminal beta-propeller
         (189 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z73105-3|CAA97441.2|  205|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase p...    28   4.8  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z81045-2|CAB02814.2|  298|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass...    27   8.4  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   8.4  
AL132949-36|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    27   8.4  
AL132949-35|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 93  LQNQNALYVQDGLDGEPRVFLDPN-TLSEDGTVALSGTKFTEDGSTLAYG 141
           ++  N LY + GL G    ++    T +EDGTV ++G K+    + +A G
Sbjct: 93  IKRLNGLY-ESGLKGSSVEYIRGRATFAEDGTVEVNGAKYRGKNTLIAVG 141


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 93  LQNQNALYVQDGLDGEPRVFLDPN-TLSEDGTVALSGTKFTEDGSTLAYG 141
           ++  N LY + GL G    ++    T +EDGTV ++G K+    + +A G
Sbjct: 107 IKRLNGLY-ESGLKGSSVEYIRGRATFAEDGTVEVNGAKYRGKNTLIAVG 155


>Z73105-3|CAA97441.2|  205|Caenorhabditis elegans Hypothetical
           protein R13.2 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query: 5   YPAVRRDETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKITRPYLDACPVQKSINE 64
           Y + + D +   D  G+K   P    ++P  +  K   +  N   RPY    P+      
Sbjct: 42  YESQQSDSSSSVDESGSKTSSPTSMQQNPSQDGRKNRKKGTNLYGRPYCPGRPLSMEERT 101

Query: 65  RLTELWN 71
           R+ +L N
Sbjct: 102 RIIQLHN 108


>U28993-6|AAK31498.2|  639|Caenorhabditis elegans Hypothetical
           protein F22D3.6 protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 11  DETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKI 48
           DE     +H  +   P RW+ DP+   TKE  E   K+
Sbjct: 85  DEFDSIQFHLRRKFKPLRWIPDPEQQVTKEIDEGNIKL 122


>AF316599-1|AAG38591.1|  639|Caenorhabditis elegans paracaspase
           protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 11  DETVVDDYHGTKIKDPYRWLEDPDSNETKEFVEAQNKI 48
           DE     +H  +   P RW+ DP+   TKE  E   K+
Sbjct: 85  DEFDSIQFHLRRKFKPLRWIPDPEQQVTKEIDEGNIKL 122


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 65  RLTELWNYPKYSCPFRKGSRYFFFKNTGLQNQNALY 100
           R+TE   YPKYS    K S    F + G+ N+   Y
Sbjct: 129 RVTEADLYPKYSVVCNKTSTLVIFVHNGITNKIEQY 164


>Z81045-2|CAB02814.2|  298|Caenorhabditis elegans Hypothetical
           protein C36F7.2 protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 89  KNTGLQNQNALYVQDGLDGEPRVFLDPNTLSEDGTVALSGTKFTEDGSTLAYGLSASGSD 148
           +NT +  +N L  Q    G    FLD  +LS     +L  ++ T   S   Y     G  
Sbjct: 47  ENTNIDQRNQLLQQASQRGSIGSFLDTTSLSTCSKRSLHSSRLTLSDSKEFY--KTVGCR 104

Query: 149 WI-AIHFKDVAT 159
           WI ++   DV+T
Sbjct: 105 WIRSVRHGDVST 116


>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform e protein.
          Length = 2702

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 39   KEFVEAQNKITRPYLDACPVQKSINERLTELWNYP 73
            K F+ AQ  I  P + +C   +SI   ++E WN P
Sbjct: 1464 KTFITAQTII--PAILSCKASESIGHTISEQWNRP 1496


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 39   KEFVEAQNKITRPYLDACPVQKSINERLTELWNYP 73
            K F+ AQ  I  P + +C   +SI   ++E WN P
Sbjct: 6310 KTFITAQTII--PAILSCKASESIGHTISEQWNRP 6342


>AL132949-36|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 56  CPVQKSINERLTELWNYPKYSCPFRKGSRYFFFKNTGL 93
           CP     +E+   LW + K+ CP       F  +N GL
Sbjct: 398 CPFSTP-HEQTGILWQFSKFECPINTSKIAFICENFGL 434


>AL132949-35|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 56  CPVQKSINERLTELWNYPKYSCPFRKGSRYFFFKNTGL 93
           CP     +E+   LW + K+ CP       F  +N GL
Sbjct: 506 CPFSTP-HEQTGILWQFSKFECPINTSKIAFICENFGL 542


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,304,569
Number of Sequences: 27539
Number of extensions: 230238
Number of successful extensions: 404
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 11
length of query: 189
length of database: 12,573,161
effective HSP length: 77
effective length of query: 112
effective length of database: 10,452,658
effective search space: 1170697696
effective search space used: 1170697696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)