GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002590-TA|BGIBMGA002590-PA|IPR002100|Transcription
factor, MADS-box
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    42   1e-04
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    41   3e-04
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    31   0.21 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.85 
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    29   0.85 
SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    29   1.1  
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ...    28   1.5  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   1.5  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    28   2.0  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   2.6  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    27   4.5  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    27   4.5  
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    27   4.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.5  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    26   6.0  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   6.0  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    26   6.0  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   7.9  
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   7.9  

>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
          Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 2  KKAYELSVLCDCEIALIIFSSNNKLYQYASTDMDKVL 38
          KKAYEL+VL DCE+A+ +     +L+ + S+D  + L
Sbjct: 30 KKAYELAVLADCEVAVTVIDRKGRLHVFCSSDYQRTL 66


>SPBC19G7.06 |mbx1||MADS-box transcription factor
          Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 27/36 (75%)

Query: 1  MKKAYELSVLCDCEIALIIFSSNNKLYQYASTDMDK 36
          +KKA+ELSVLCD ++ ++IF S N  + Y+S + ++
Sbjct: 39 IKKAHELSVLCDAKVVVMIFDSKNACHVYSSEEPEE 74


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 18/58 (31%), Positives = 28/58 (48%)

Query: 42  TEYNEPHESLTNRNIIEALTKKEHKNGVMSPDSPEAEPEYNLTPRTEAKYSKIDEEFQ 99
           +E  EP ++ T    + AL K+E  N      S E   + NL P  EA+  +  +EF+
Sbjct: 558 SEVLEPEKAHTTNLQLNALDKEEDLNITTVKQSSEPTADDNLIPNKEAEIIQSSDEFE 615


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 5/152 (3%)

Query: 152 SSSETDSVYPSGGMLEMSNGYPGSASPLGAGCTXXXXXXXXXXXXXXXXXXXXXXXXXXX 211
           SSS + S  P+     +S+    S+SP     T                           
Sbjct: 274 SSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS 333

Query: 212 XXXXNNLRVVIPSSMPPPQDDISYAETPLSYSLTNFGPQDFSMTSDMGIGLT----WGAH 267
               ++   +  SS  P     S + T  S S ++F     S +S     LT      + 
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFS-STTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSR 392

Query: 268 QLQTLQHNSSMEPAARPKNMTRAALPRSEAFH 299
              +  H+SS+       +   ++ P S AF+
Sbjct: 393 PASSSSHSSSLSSHKSSSSSKSSSAPVSSAFY 424


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 21  SSNNKLYQYASTDMDKVLLKYTEYNEPHESLTNRNIIEALTKKEHKNGVMSPDSPEAEPE 80
           SS  K     S+ +   LL         E LTN +  E +   +     +   SP+  PE
Sbjct: 608 SSGRKWLDSLSSSLPSSLLNRGSSTHSWEKLTNASTEEVMLPLDMVVNELLEKSPKVFPE 667

Query: 81  YN-LTPRTEAKYSKIDEEFQMMMQRNQLNGSRVGVGVTGSNYNLPVSVPVGNYDQSLLQA 139
            + L    ++++ K  +  Q + +      SR     + S Y+LP   P  +Y Q+ L  
Sbjct: 668 DSRLLFAEQSRHPKYTDIIQKLKKP-----SREKSFTSSSEYSLPFISPASDYQQNPLLH 722

Query: 140 SPQMHTSISPRPSSSE 155
           + +   SI  +    E
Sbjct: 723 ATKSLVSIHQQSQRGE 738


>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 64  EHKNGVMSPDSPEAEPEYNLTPRTEAKYSKIDEEFQMMMQRNQ 106
           E K GV  PDS     +     RTE   SK++E  QM+ Q+ +
Sbjct: 32  EAKGGVSDPDSRLDGEKLISAARTEESISKLEEGEQMINQQTE 74


>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 240

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 132 YDQSLLQASPQMHTSISPRPSSSETDSVYPSGGML 166
           +D+S L+AS   +  +SPR S  + D V P   ML
Sbjct: 176 FDESNLEASLSPNAELSPRKSHIDHDFVIPEDEML 210


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 123 LPVSVPVGNYDQSLLQASPQMHTSISPRPSSSET 156
           +PV  PV  Y   +   +P  HTS++P P+ + T
Sbjct: 598 IPVGYPVPGYTPYM--RNPSQHTSVAPSPNGTPT 629


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 64  EHKNGVMSPDSPEAEPEYNLTPRTEAKYSKIDEEFQMMMQRNQL 107
           EH  G+ +   P AE E   TP+ +  Y  +D+ F ++    Q+
Sbjct: 107 EHDIGLPASQVPAAEEEVESTPKAKPLYFLLDKRFWIVFFLGQV 150


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 131 NYDQSLLQASPQMHTSISPRPSSSETDSVYPSGGMLEMSNGYPGSASPLGAG 182
           +Y+QSL +  PQ    IS   SS  + S+       + + G P  +SP   G
Sbjct: 313 SYEQSLYEEYPQFAEPISVSQSSDSSSSIPKKSN--DEAGGSPSKSSPTRPG 362


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 97  EFQMMMQRNQLNGSRVGVGVTGSNYNLPVSVPVGNYDQSLLQASPQMHTSISPRPSSSET 156
           E ++  QR      R+    T +  + P SV  G   Q     SP + TSI   P  + +
Sbjct: 435 EIRLAEQRMNEERRRLSAAATATPMSAPTSVLTGTSPQP----SPSLSTSIMSTPKLNPS 490

Query: 157 DSV 159
           +SV
Sbjct: 491 ESV 493


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 226 MPPPQDDISYAETPLSYSLTNFGP 249
           +PPP+D  SY E  L  +L N  P
Sbjct: 9   VPPPKDPPSYEEVALHSALNNSAP 32


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 11  CDCEIALIIFSSNNKLYQYASTDMD------KVLLKYTEYNEPH-ESLTNRNIIEAL 60
           C+ E      + + K+Y  AS DMD       VLL++  ++E   E ++  NI +AL
Sbjct: 158 CEAEAQCAALARSGKVYAAASEDMDTLCFQAPVLLRHLTFSEQRKEPISEYNIEKAL 214


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 109 GSRVGVGVTGSNYNLPVSVPVGNYDQSLLQASPQMHTSISPRPSSS----ETDSVYPSGG 164
           GS V +  T    +   S P+     S   ++    +S SP PS+S     + S+ P+GG
Sbjct: 67  GSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGG 126

Query: 165 MLEMSNGYPGSASPLGAGCT 184
              +S     +  P     T
Sbjct: 127 SSSLSTPITPTVPPTSTSST 146


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 219 RVVIPSSMPPPQDDISYAETPLSYS 243
           R  + ++  PP DD+ Y+ET   YS
Sbjct: 25  RSELAAAFEPPDDDVEYSETAPLYS 49


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 223 PSS--MPPPQDDISYAETPLSYSLTNF--GPQDFSMTSDMGIGLTWGAHQLQTLQHNSSM 278
           PSS  + P  D  S      S S   +   P   S   D G  L   +H++ + + + ++
Sbjct: 112 PSSPGISPSNDSQSQNTNHTSISANPYVNNPSHTSRNPDSGSSLNTASHEVPSSKSDVNV 171

Query: 279 EPAARPKNMTRAALPRSEAFHD 300
           +  AR K+ +R  +  S+   D
Sbjct: 172 QMLARLKSKSRQKISSSDPLED 193


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 19  IFSSNNKLYQYASTDMDKVLLKYT-EYNEPHESLTNRNIIEALTKKEHKNGVMSPDSPEA 77
           + SS     Q    D + + LKY  +  +  +S   R+++E          +++ +   A
Sbjct: 816 LLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLLTTERAIA 875

Query: 78  EPEYNLTPRTEAKYSKIDEEFQMMMQRNQ 106
             +  +  RT+ + + I++ F    Q+N+
Sbjct: 876 LDKEEILRRTQERLANIEDSFSETKQQNE 904


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 64  EHKNGVMSPDSPEAEPEYNLTPRTEAKYSKIDEEFQMMMQRNQLNGSRVGVGVT 117
           E   G M P   E      +  R E+ +S + E F+   Q  Q    R G GV+
Sbjct: 118 ESGTGTMGPAVGELTSPV-MKNRAESIFSPVTESFEAFTQGMQTTPQRAGAGVS 170


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 241 SYSLTNFGPQDFSMTSDMGIGLTWGAHQLQTL 272
           S SLTN  P+ F+M     +GLT  A  +QTL
Sbjct: 32  SISLTNNFPKVFAMGDKTYLGLTGLATDVQTL 63


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,423
Number of Sequences: 5004
Number of extensions: 56765
Number of successful extensions: 150
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 141
Number of HSP's gapped (non-prelim): 19
length of query: 311
length of database: 2,362,478
effective HSP length: 73
effective length of query: 238
effective length of database: 1,997,186
effective search space: 475330268
effective search space used: 475330268
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 54 (25.8 bits)