GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002590-TA|BGIBMGA002590-PA|IPR002100|Transcription
factor, MADS-box
         (311 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.16 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    27   0.28 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    24   2.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    24   2.0  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 16/101 (15%)

Query: 83  LTPRTEAKYSKIDEEFQMMMQRNQLNGSR-VGVGVTGSNYNLPVSVPVGNYDQSLLQASP 141
           +T  T A+  +  ++ Q   Q+ Q + S  + VG      N P S P        L A+ 
Sbjct: 787 ITTTTGARQQQQQQQQQQQQQQQQQSSSDYLMVG------NSPASSP------RYLSAAA 834

Query: 142 QMHTSISPRPSSSETDSVYPSG---GMLEMSNGYPGSASPL 179
              TS SPRP+SS   ++  SG    M+E+      S  PL
Sbjct: 835 TSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQQPL 875


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 57  IEALTKKEHKNGVMSPDSPEAEPEYN--LTPRTEAKYSKIDEE 97
           I A+    H+    + +S  +E  +N   TPR+ AK S ID+E
Sbjct: 236 INAVQSTRHREADDAEESVSSETNHNERSTPRSHAKPSLIDDE 278


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 275 NSSMEPAARPKNMTRAALPRSE 296
           N++++P  RP  + R A P +E
Sbjct: 19  NTNLDPPTRPTRLRREAKPEAE 40


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 275 NSSMEPAARPKNMTRAALPRSE 296
           N++++P  RP  + R A P +E
Sbjct: 20  NTNLDPPTRPARLRREAKPEAE 41


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 275 NSSMEPAARPKNMTRAALPRSE 296
           N++++P  RP  + R A P +E
Sbjct: 20  NTNLDPPTRPTRLRREAEPEAE 41


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 223 PSSMPPPQDDIS 234
           P S PPP DDIS
Sbjct: 661 PDSDPPPPDDIS 672


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)

Query: 93  KIDEEFQMMMQRNQLNGSRVGVGVTGSNYNLPV 125
           K D+E    ++   L GS++    + SN  LP+
Sbjct: 436 KFDDEAHWELEEESLQGSKIKESNSCSNDQLPM 468


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 76  EAEPEYNLTPRTEAKYSKIDEEFQMMM 102
           +A   Y+ T   + KYSKI ++  M+M
Sbjct: 568 QAPSLYDTTKPIDIKYSKIAKKKMMLM 594


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,358
Number of Sequences: 429
Number of extensions: 4160
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 8
length of query: 311
length of database: 140,377
effective HSP length: 58
effective length of query: 253
effective length of database: 115,495
effective search space: 29220235
effective search space used: 29220235
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)