GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002589-TA|BGIBMGA002589-PA|undefined
         (64 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E4A69A Cluster: PREDICTED: similar to reverse tr...    30   7.8  

>UniRef50_UPI0000E4A69A Cluster: PREDICTED: similar to reverse
            transcriptase-like protein; n=4; Strongylocentrotus
            purpuratus|Rep: PREDICTED: similar to reverse
            transcriptase-like protein - Strongylocentrotus
            purpuratus
          Length = 2519

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 5    TVDNMAASSKMECRKFGNCAAARGCAEVASDGRGNTFLKYRTTD 48
            T D+  AS +++C   G C    GC    SD    T+ +   +D
Sbjct: 1596 TGDHFGASCELDCNCDGTCDRVNGCGGTCSDSYEGTYCQALRSD 1639


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,917,311
Number of Sequences: 1657284
Number of extensions: 1874724
Number of successful extensions: 4772
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4771
Number of HSP's gapped (non-prelim): 1
length of query: 64
length of database: 575,637,011
effective HSP length: 44
effective length of query: 20
effective length of database: 502,716,515
effective search space: 10054330300
effective search space used: 10054330300
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 65 (30.3 bits)