GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002589-TA|BGIBMGA002589-PA|undefined
         (64 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   0.76 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   1.0  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 0.76
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 18  RKFGNCAAARGCAEVASDGRGNTFLKYR 45
           R  G+ AAARG A   +DG G     +R
Sbjct: 282 RAAGDAAAARGAAR--ADGAGGPLHDHR 307


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 1.0
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query: 20  FGNCAAARGCAEVASDG 36
           + NC A+  C EV  DG
Sbjct: 525 WANCTASTRCWEVFMDG 541


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,826
Number of Sequences: 317
Number of extensions: 366
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 114,650
effective HSP length: 43
effective length of query: 21
effective length of database: 101,019
effective search space:  2121399
effective search space used:  2121399
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.8 bits)
S2: 34 (17.8 bits)