GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002589-TA|BGIBMGA002589-PA|undefined
         (64 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   1.6  
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   1.6  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    23   6.6  

>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 8   NMAASSKMECRKFGNCAAARGCAEVASDGRGN 39
           NMA  S  +C    N   ARG A +A+D RG+
Sbjct: 87  NMA--STYDCDTGANAVGARGGATLAADYRGD 116


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 8   NMAASSKMECRKFGNCAAARGCAEVASDGRGN 39
           NMA  S  +C    N   ARG A +A+D RG+
Sbjct: 87  NMA--STYDCDTGANAVGARGGATLAADYRGD 116


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 4   LTVDNMAASSKMECRKFGNCAAARGCAE 31
           L +D+++A+S+   + FG C   R C E
Sbjct: 84  LRMDHVSANSEKFRQVFGICWLKRACEE 111


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 248,860
Number of Sequences: 5004
Number of extensions: 6872
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 64
length of database: 2,362,478
effective HSP length: 44
effective length of query: 20
effective length of database: 2,142,302
effective search space: 42846040
effective search space used: 42846040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)