Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002589-TA|BGIBMGA002589-PA|undefined
(64 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0855 - 7064842-7064886,7065616-7065698,7068419-7068698 27 1.4
04_04_1045 - 30400162-30400434,30400763-30400835,30400931-304010... 27 1.4
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 27 1.4
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 27 1.9
03_06_0073 + 31474832-31475284 26 4.4
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 25 5.8
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 25 5.8
03_06_0054 + 31313348-31313560,31313662-31313856,31313933-313140... 25 5.8
06_01_0083 - 659510-661267,661577-662384,662700-663646 25 7.6
>07_01_0855 - 7064842-7064886,7065616-7065698,7068419-7068698
Length = 135
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 4 LTVDNMAASSKMECRKFGNCAAARGCAEVASDGRGNTFLKYRTTDDG 50
+ VD +A+ ++++ ++ GC EVA D G R TD+G
Sbjct: 1 MRVDELASEARLDGSEWCRRQREEGCVEVADDAMGG----LRLTDEG 43
>04_04_1045 -
30400162-30400434,30400763-30400835,30400931-30401042,
30401151-30401348,30401685-30401856
Length = 275
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 1 MADLTVDNMAASSKMECRKFGNCAAARGCAEVASDGRGNTF 41
++D + M S+ RK G CA R E+ D G+ F
Sbjct: 10 LSDCHEEKMLFSTIESIRKIGKCAIKRNIPEIEFDADGSIF 50
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 16 ECRKFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
E KFG + C + RGN ++ Y++ D L + + R F
Sbjct: 237 EFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSMNGRYF 283
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 39 NTFLKYRTTDDGLRVFGRIGKRL 61
N FL Y + +DG+ +F +G+RL
Sbjct: 456 NKFLYYFSNEDGVSMFEEVGRRL 478
>03_06_0073 + 31474832-31475284
Length = 150
Score = 25.8 bits (54), Expect = 4.4
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 21 GNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGR 56
GNC A + + +GN + R DG+ VFGR
Sbjct: 2 GNCVGASN-RSTSRENKGNHRVSRRYGVDGITVFGR 36
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 20 FGNCAAARGCAEVASDGRGNTFLKYRTTDD 49
F AA G E A+ G GN ++ T+DD
Sbjct: 255 FNQGGAAPGAYEGANYGGGNNYMNNATSDD 284
>05_07_0332 -
29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 25.4 bits (53), Expect = 5.8
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 3 DLTVDNMA--ASSKMECRKFGNCAAARGCAEVASDGR 37
D ++ MA A+ M+ R + N AAAR C V S GR
Sbjct: 631 DFVLEEMAWMANDFMQERLWKNMAAARVCHWVVSKGR 667
>03_06_0054 +
31313348-31313560,31313662-31313856,31313933-31314098,
31314193-31314599
Length = 326
Score = 25.4 bits (53), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 5 TVDNMAASSKMECRKFGNCAAARGCAEVASDGRGN 39
TVD++AAS+ + F + G V S G+GN
Sbjct: 283 TVDSLAASTPDFYKAFADAIVKLGRVGVKSGGKGN 317
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 25.0 bits (52), Expect = 7.6
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 1 MADLTVDNMAASSKMECRKFGNCAAARGC-AEVASDGRGNTFL 42
+ D +++ A+ +M K +CA GC A+V SD RG+ L
Sbjct: 124 LMDKVIESEASHPQMAGAKGSSCAI-NGCDAKVMSDERGDDIL 165
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.137 0.417
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,651
Number of Sequences: 37544
Number of extensions: 60675
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 9
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)
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