GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002589-TA|BGIBMGA002589-PA|undefined
         (64 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021186-1|AAH21186.1|  202|Homo sapiens U2 small nuclear RNA au...    29   3.0  
AY569437-1|AAT72770.3|  181|Homo sapiens U2 small nuclear RNA au...    28   3.9  

>BC021186-1|AAH21186.1|  202|Homo sapiens U2 small nuclear RNA
          auxiliary factor 1-like 4 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 19 KFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
          K+G       C  +     GN ++K+R  +DG R    +  R F
Sbjct: 53 KYGEIEEMNVCDNLGDHVVGNVYVKFRREEDGERAVAELSNRWF 96


>AY569437-1|AAT72770.3|  181|Homo sapiens U2 small nuclear RNA
          auxiliary factor 1-like 3 splicing variant 1 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 19 KFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
          K+G       C  +     GN ++K+R  +DG R    +  R F
Sbjct: 53 KYGEIEEMNVCDNLGDHLVGNVYVKFRREEDGERAVAELSNRWF 96


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,729,531
Number of Sequences: 224733
Number of extensions: 208938
Number of successful extensions: 445
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 73,234,838
effective HSP length: 44
effective length of query: 20
effective length of database: 63,346,586
effective search space: 1266931720
effective search space used: 1266931720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)