GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002589-TA|BGIBMGA002589-PA|undefined
         (64 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122140-1|AAM52652.1|  321|Drosophila melanogaster GM14666p pro...    27   3.2  
AE014134-772|AAO41150.1|  314|Drosophila melanogaster CG3294-PB,...    27   3.2  
AE014134-771|AAF50982.2|  446|Drosophila melanogaster CG3294-PA,...    27   3.2  
U67066-1|AAB17271.1|  264|Drosophila melanogaster U2 snRNP auxil...    26   7.5  
AY058537-1|AAL13766.1|  264|Drosophila melanogaster LD24048p pro...    26   7.5  
AE014134-79|AAF51512.1|  264|Drosophila melanogaster CG3582-PA p...    26   7.5  

>AY122140-1|AAM52652.1|  321|Drosophila melanogaster GM14666p
           protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 16  ECRKFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
           E RKFG     R         RG+ F++Y      LR F  +  R +
Sbjct: 253 ELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYY 299


>AE014134-772|AAO41150.1|  314|Drosophila melanogaster CG3294-PB,
           isoform B protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 16  ECRKFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
           E RKFG     R         RG+ F++Y      LR F  +  R +
Sbjct: 246 ELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYY 292


>AE014134-771|AAF50982.2|  446|Drosophila melanogaster CG3294-PA,
           isoform A protein.
          Length = 446

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)

Query: 16  ECRKFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
           E RKFG     R         RG+ F++Y      LR F  +  R +
Sbjct: 246 ELRKFGTIVNFRTVRNTLEHLRGHVFVEYTNERSALRAFTNLQGRYY 292


>U67066-1|AAB17271.1|  264|Drosophila melanogaster U2 snRNP
           auxiliary factor protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 7   DNMAASSKMECR-KFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
           DN      +EC  K+G       C  +     GN ++K+R   D  +    +  R F
Sbjct: 81  DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWF 137


>AY058537-1|AAL13766.1|  264|Drosophila melanogaster LD24048p
           protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 7   DNMAASSKMECR-KFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
           DN      +EC  K+G       C  +     GN ++K+R   D  +    +  R F
Sbjct: 81  DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWF 137


>AE014134-79|AAF51512.1|  264|Drosophila melanogaster CG3582-PA
           protein.
          Length = 264

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 7   DNMAASSKMECR-KFGNCAAARGCAEVASDGRGNTFLKYRTTDDGLRVFGRIGKRLF 62
           DN      +EC  K+G       C  +     GN ++K+R   D  +    +  R F
Sbjct: 81  DNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWF 137


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.325    0.137    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,696
Number of Sequences: 52641
Number of extensions: 81710
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 6
length of query: 64
length of database: 24,830,863
effective HSP length: 44
effective length of query: 20
effective length of database: 22,514,659
effective search space: 450293180
effective search space used: 450293180
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)