GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002588-TA|BGIBMGA002588-PA|undefined
         (91 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   4.1  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    23   7.2  
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.2  

>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 12 RHSTEHLFTSFPVDQQVDVE 31
          R S +HL +SFP D  +D++
Sbjct: 31 RASEDHLVSSFPNDSIIDLQ 50


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 14  STEHLFTSFPVDQQVDVEL 32
           S  HLFT  P  ++++ EL
Sbjct: 179 SKSHLFTQEPTPEEIEAEL 197


>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 117

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 61  AGIRESNPRPWAYKERKQWHHQVSEKFSK 89
           +G R++N   WA K  K+     +  FSK
Sbjct: 84  SGPRDNNRNKWAKKHLKKGKRAKNSNFSK 112


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 420,924
Number of Sequences: 5004
Number of extensions: 14120
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 3
length of query: 91
length of database: 2,362,478
effective HSP length: 61
effective length of query: 30
effective length of database: 2,057,234
effective search space: 61717020
effective search space used: 61717020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)