GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002588-TA|BGIBMGA002588-PA|undefined
         (91 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0123 - 12512116-12512442,12512742-12512846,12512928-125130...    27   2.6  
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    26   4.5  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    25   5.9  
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058...    25   5.9  
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    25   5.9  
06_01_1064 - 8609162-8610583                                           25   7.8  
03_04_0197 + 18375497-18375943,18376666-18377052,18377166-183774...    25   7.8  

>09_03_0123 -
          12512116-12512442,12512742-12512846,12512928-12513091,
          12513282-12513480,12514368-12514585,12514674-12514743
          Length = 360

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 70 PWAYKERKQWHHQVSEK 86
          PW YK  + WH Q+ E+
Sbjct: 23 PWVYKPAELWHWQMKEQ 39


>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query: 72  AYKERKQWHHQVSEKFS 88
           A KE+K WH ++SE+F+
Sbjct: 185 ADKEKKNWHAKLSEEFN 201


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 68  PRPWAYKERKQWHHQV 83
           P PW Y   K W+H V
Sbjct: 514 PIPWPYSRDKIWYHNV 529


>06_03_0712 +
           23803597-23803945,23804118-23805479,23805743-23805811,
           23806050-23806330,23806817-23807076,23807521-23807689,
           23807796-23808068,23808251-23808499
          Length = 1003

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)

Query: 44  ILEITFGDKSHTVIWPQAGIRESNPRPWAYKERKQWHHQVSEKFSKS 90
           ++E+  G      +  +AG  + +P  W    R  +  Q+S KF K+
Sbjct: 834 LMEMFSGGPLEHRMMQKAGCIDYSPTEWELVSRNIYQRQISYKFDKN 880


>06_02_0364 +
          15178583-15178881,15179652-15179723,15179853-15179917,
          15180890-15180934,15182493-15183170,15183376-15183410,
          15183647-15183736,15183896-15183985,15184164-15184262,
          15184938-15185013,15185473-15185588
          Length = 554

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 60 QAGIRESNPRPWAYKERKQ 78
          +AG ++  PRPW  K+R Q
Sbjct: 51 RAGSQDRPPRPWQQKQRTQ 69


>06_01_1064 - 8609162-8610583
          Length = 473

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 30  VELRDKGRRGARALILEITFGDKSHTVIWPQAGIRESNPRPWA 72
           VE + + RRG R  ++    G K ++  W        +  PWA
Sbjct: 415 VEAKGRMRRGDRVWMIGFGSGFKCNSAAWECISPARDDDGPWA 457


>03_04_0197 +
           18375497-18375943,18376666-18377052,18377166-18377410,
           18377651-18378221
          Length = 549

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 6   ETVIRPRHSTEHLFTSFPVDQQVDVELRDKGRRGARALILEITFG-DKSHTVIWPQAGIR 64
           E V+     +   F S P++ +  VE++D G  G        +   D + +VI     I+
Sbjct: 286 EQVVNEMKDSTVKFFSLPLESKRTVEIQDNGFEGFGHHYRRASGKLDWAESVILLTQPIQ 345

Query: 65  ESNPRPW 71
           E NP  W
Sbjct: 346 ERNPEMW 352


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,699
Number of Sequences: 37544
Number of extensions: 97611
Number of successful extensions: 180
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 7
length of query: 91
length of database: 14,793,348
effective HSP length: 69
effective length of query: 22
effective length of database: 12,202,812
effective search space: 268461864
effective search space used: 268461864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)