GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002588-TA|BGIBMGA002588-PA|undefined
         (91 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126304-1|AAI26305.1|  664|Homo sapiens cyclic nucleotide gated...    29   2.3  
BC126302-1|AAI26303.1|  664|Homo sapiens cyclic nucleotide gated...    29   2.3  

>BC126304-1|AAI26305.1|  664|Homo sapiens cyclic nucleotide gated
          channel alpha 2 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 7  TVIRPRHSTEHLFTSFPVDQQVDVELRDKGRRGARALILEITFGDKSHTVIWPQAGIRES 66
          T  RP HS     TS  + +  DV+   +GR G R ++  +    +     W     RE 
Sbjct: 34 TSSRP-HSAADDDTSSELQRLADVDAPQQGRSGFRRIVRLVGIIRE-----WANKNFREE 87

Query: 67 NPRPWAYKER 76
           PRP ++ ER
Sbjct: 88 EPRPDSFLER 97


>BC126302-1|AAI26303.1|  664|Homo sapiens cyclic nucleotide gated
          channel alpha 2 protein.
          Length = 664

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 7  TVIRPRHSTEHLFTSFPVDQQVDVELRDKGRRGARALILEITFGDKSHTVIWPQAGIRES 66
          T  RP HS     TS  + +  DV+   +GR G R ++  +    +     W     RE 
Sbjct: 34 TSSRP-HSAADDDTSSELQRLADVDAPQQGRSGFRRIVRLVGIIRE-----WANKNFREE 87

Query: 67 NPRPWAYKER 76
           PRP ++ ER
Sbjct: 88 EPRPDSFLER 97


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,368
Number of Sequences: 224733
Number of extensions: 502052
Number of successful extensions: 585
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 2
length of query: 91
length of database: 73,234,838
effective HSP length: 69
effective length of query: 22
effective length of database: 57,728,261
effective search space: 1270021742
effective search space used: 1270021742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)