GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002588-TA|BGIBMGA002588-PA|undefined
         (91 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical...    27   1.7  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    27   1.7  
AL032654-5|CAD91715.1|  505|Caenorhabditis elegans Hypothetical ...    26   3.0  
AL032654-4|CAA21721.1|  541|Caenorhabditis elegans Hypothetical ...    26   3.0  
AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical ...    26   3.9  
AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival...    26   3.9  
U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical pr...    25   6.8  
U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical pr...    25   9.0  

>AC024214-15|AAM97983.1|  544|Caenorhabditis elegans Hypothetical
          protein Y77E11A.12a protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 63 IRESNPRPWAYKERKQWHHQVSEKFSKSD 91
          +R S+PRP   ++  +W ++ S   S +D
Sbjct: 8  LRNSSPRPLILQQHAKWRNEESSSISSTD 36


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 63  IRESNPRPWAYKERKQWHHQVSEKFSKSD 91
           +R S+PRP   ++  +W ++ S   S +D
Sbjct: 108 LRNSSPRPLILQQHAKWRNEESSSISSTD 136


>AL032654-5|CAD91715.1|  505|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3b protein.
          Length = 505

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2   RLNGETVIRPRHSTEHLFTSFPVDQQVDVELRDKGRRGARALILEITFGDKSHTVIW-PQ 60
           RLN +T+I      EH     P+   V +++R KG  G  +    + FG   ++V++ P 
Sbjct: 250 RLNHDTLIFSLQLPEHTTYRIPIGHHVSIKIR-KGSMGKFSWKFFLIFG---YSVLYRPY 305

Query: 61  AGIRESNPRP 70
             I  SNP P
Sbjct: 306 TPI--SNPDP 313


>AL032654-4|CAA21721.1|  541|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3a protein.
          Length = 541

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 2   RLNGETVIRPRHSTEHLFTSFPVDQQVDVELRDKGRRGARALILEITFGDKSHTVIW-PQ 60
           RLN +T+I      EH     P+   V +++R KG  G  +    + FG   ++V++ P 
Sbjct: 286 RLNHDTLIFSLQLPEHTTYRIPIGHHVSIKIR-KGSMGKFSWKFFLIFG---YSVLYRPY 341

Query: 61  AGIRESNPRP 70
             I  SNP P
Sbjct: 342 TPI--SNPDP 349


>AL117203-4|CAB55106.2|  813|Caenorhabditis elegans Hypothetical
           protein Y48C3A.7 protein.
          Length = 813

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 8   VIRPRHSTEHLFTSFP-VDQQVDVELRDKGRRGARALILE 46
           ++RP    + LF  FP V+ +VD+ LR   + G R ++ E
Sbjct: 687 ILRPGRLDKILFVDFPSVEDRVDI-LRKSTKNGTRPMLGE 725


>AF059715-1|AAF05624.1|  813|Caenorhabditis elegans cell survival
           CED-4-interactingprotein MAC-1 protein.
          Length = 813

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 8   VIRPRHSTEHLFTSFP-VDQQVDVELRDKGRRGARALILE 46
           ++RP    + LF  FP V+ +VD+ LR   + G R ++ E
Sbjct: 687 ILRPGRLDKILFVDFPSVEDRVDI-LRKSTKNGTRPMLGE 725


>U49955-1|AAA93430.1|  481|Caenorhabditis elegans Hypothetical
           protein C27D9.1 protein.
          Length = 481

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 1   MRLNGETVIRPRHSTEHLFTSFPVDQQVDVEL 32
           M +    +IRPRH  +H F    VD Q   E+
Sbjct: 296 MFVTDHNIIRPRHERDH-FERVEVDMQAGDEI 326


>U88184-7|AAK31516.1|  576|Caenorhabditis elegans Hypothetical
           protein F36H5.5 protein.
          Length = 576

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 4   NGETVIRPRHSTEHLFTSFPVDQQ 27
           NGE ++R R+     FT+ P D++
Sbjct: 91  NGEVIVRKRNQENITFTAPPFDER 114


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.133    0.417 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,288
Number of Sequences: 27539
Number of extensions: 78934
Number of successful extensions: 121
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 118
Number of HSP's gapped (non-prelim): 8
length of query: 91
length of database: 12,573,161
effective HSP length: 69
effective length of query: 22
effective length of database: 10,672,970
effective search space: 234805340
effective search space used: 234805340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)