GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002587-TA|BGIBMGA002587-PA|IPR000323|Copper type II,
ascorbate-dependent monooxygenase, core, IPR000720|Peptidyl-glycine
alpha-amidating monooxygenase, IPR008977|PHM/PNGase F Fold
         (273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    29   0.54 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.7  
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar...    26   6.7  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   6.7  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   8.8  

>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 230 LMYWVENDTPLKQKYCFTAGPPNYYWSEAHENFNWIPDLE 269
           L+Y    D P KQ  C+ A P N YW +  + F+ IP L+
Sbjct: 364 LLYLNALDAP-KQLLCYEADPKNLYWDK--DKFSDIPVLQ 400


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 126 MVEHMETACTMTEDKTIHPFAFRTHTHSLGTLVSGYVVHRNKDGDEWTLLGKKNPQLPQM 185
           M +++E A    ++  I     +    ++    + Y+++ +  G    LL KKNP   +M
Sbjct: 293 MKDNVEAALLKLQEAQIQIGTLKLWKRNVTGCGATYILNGSDFGLNLILLNKKNPS-HRM 351

Query: 186 FYPTE 190
           F+P E
Sbjct: 352 FFPVE 356


>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
           Nup107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 29  RNVIDEIYSTASPCRSGSQIVYAWARDAPS 58
           R V++E Y + +P    + IV+ WARD  S
Sbjct: 139 RAVLEEEYYSQNPEAFENNIVFNWARDNSS 168


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 209 NSHEYVVKIGATNQDEMCNFYLMYW 233
           N+H Y++ I   N+ E+    L YW
Sbjct: 337 NAHSYLLNISRINEREIFKICLEYW 361


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 151 THSLGTLVSGYVVHRNKDGDEWTLLGKKNPQLPQMFYPTENRDPIKKNDVLAA 203
           T +   +V   V++    GD  T+LG+K    P  F    N D ++K  + AA
Sbjct: 122 TATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNND-VEKARITAA 173


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,474,154
Number of Sequences: 5004
Number of extensions: 66186
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 6
length of query: 273
length of database: 2,362,478
effective HSP length: 72
effective length of query: 201
effective length of database: 2,002,190
effective search space: 402440190
effective search space used: 402440190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)