GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002587-TA|BGIBMGA002587-PA|IPR000323|Copper type II,
ascorbate-dependent monooxygenase, core, IPR000720|Peptidyl-glycine
alpha-amidating monooxygenase, IPR008977|PHM/PNGase F Fold
         (273 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1214 - 11583510-11583653,11585063-11585148,11585234-115853...    29   3.0  
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   3.0  
04_04_1104 - 30928475-30928501,30929008-30929110,30929287-309293...    29   4.0  

>07_01_1214 -
           11583510-11583653,11585063-11585148,11585234-11585316,
           11585415-11585572,11587083-11587243,11588058-11588279,
           11588553-11588677,11589538-11589656,11589961-11590020,
           11590292-11590370,11591936-11592100,11592632-11592660,
           11593439-11593500,11594724-11594859,11594999-11595161,
           11595245-11595384,11597811-11597899,11598914-11599001,
           11599558-11599658,11599711-11599859,11600769-11600870,
           11601888-11601973,11602064-11602309
          Length = 930

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 230 LMYWVENDTPLKQKYCFTAGPPNYYW---SEAHENFNWIPDLEASTP 273
           L  W  +D  L     F+ GPP+Y      E+HEN+++  +  +S P
Sbjct: 843 LSNWSFSDMTLPDPQSFSGGPPSYICRLSGESHENWSFWLEANSSEP 889


>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 197 KNDVLAARCTMNNSHEYVVKIGATNQDEMCNFYLMYWVEN 236
           + +V   RC+ N  H  +V +    QD M      YW+E+
Sbjct: 853 QREVALLRCSQNKLHVVLVDMAQDGQDTMLRVLGSYWMED 892


>04_04_1104 -
           30928475-30928501,30929008-30929110,30929287-30929340,
           30929803-30929895,30930063-30930140,30930416-30930527,
           30930618-30930756,30930823-30930910,30930984-30931079,
           30931675-30931781,30931874-30932009,30932089-30932186,
           30932954-30933047,30933132-30933301,30933749-30933819,
           30936066-30936194,30936552-30936654,30936764-30936907,
           30937123-30937245,30937482-30937563,30939044-30939120,
           30939261-30939315,30939365-30939443,30939544-30939620,
           30939739-30939869,30939947-30940120,30940245-30940310,
           30940937-30941572
          Length = 1113

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 30  NVIDEIYST-ASPCRSGSQIVYAWARDAPSLHLPKDVGFLVGQGSPI 75
           N++DE+  T A  C     +VYA  RD   L      GF +G G+ +
Sbjct: 268 NIMDELDETKALSCLQIETLVYACQRDLYHLPTGDRAGFFIGDGAGV 314


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,245,996
Number of Sequences: 37544
Number of extensions: 402359
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 3
length of query: 273
length of database: 14,793,348
effective HSP length: 81
effective length of query: 192
effective length of database: 11,752,284
effective search space: 2256438528
effective search space used: 2256438528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)