GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002587-TA|BGIBMGA002587-PA|IPR000323|Copper type II,
ascorbate-dependent monooxygenase, core, IPR000720|Peptidyl-glycine
alpha-amidating monooxygenase, IPR008977|PHM/PNGase F Fold
         (273 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-30|AAK73930.1|  324|Caenorhabditis elegans Hypothetical...   256   9e-69
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...   161   6e-40
Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical pr...    56   4e-08
AF026213-10|AAB71301.1|  478|Caenorhabditis elegans Protein kina...    30   1.5  
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    30   1.5  
Z67755-3|CAA91757.1|  336|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical...    28   6.2  

>AC025726-30|AAK73930.1|  324|Caenorhabditis elegans Hypothetical
           protein Y71G12B.4 protein.
          Length = 324

 Score =  256 bits (628), Expect = 9e-69
 Identities = 122/266 (45%), Positives = 172/266 (64%), Gaps = 8/266 (3%)

Query: 3   TAHHMLLYGCSEPGSNDSVWNCGEMQRNVIDEIYSTASPCRSGSQIVYAWARDAPSLHLP 62
           TAHH+LL+GC EPGS++ VW+CGEM  N  D+    A  C S   I+YAWA DAP L LP
Sbjct: 64  TAHHILLFGCEEPGSDELVWDCGEM--NKPDDEMPRAPTCGSKPAILYAWALDAPPLELP 121

Query: 63  KDVGFLVGQGSPIKYLVLQVHYMHRFPKGHTDNSGVFLKYTKAHMPRQAGVILLGTSGII 122
           +DVGF VG  S I++LV+QVHYMH   K   D +G+ + +T+   P+ A  +LL T G +
Sbjct: 122 QDVGFRVGGDSNIRHLVMQVHYMHS--KQEPDETGLEITHTEEPQPKLAATMLLVTGGTL 179

Query: 123 MPNMVEHMETACTMTEDKTIHPFAFRTHTHSLGTLVSGYVVHRN-KDGDEWTLLGKKNPQ 181
             N  E  ETAC + ED  +HPFA+RTHTH  G  VSG++V  + K  D W L+G+++PQ
Sbjct: 180 PRNKTESFETACMIEEDVVMHPFAYRTHTHRHGKEVSGWLVKEDQKHEDHWKLIGRRDPQ 239

Query: 182 LPQMFYPTENRD-PIKKNDVLAARCTMNNSHEYVVKIGATNQDEMCNFYLMYWVENDTPL 240
           L QMF P E++   I++ D++ ARC + N+    + +GAT +DEMCNFY+MYW + +  +
Sbjct: 240 LAQMFVPVEDQAMTIQQGDMVTARCILQNNENRDISMGATEEDEMCNFYIMYWTDGEV-M 298

Query: 241 KQKYCFTAGPPNYYWSEAHENFNWIP 266
           +   C++ G P+Y W+    + N IP
Sbjct: 299 QDNTCYSPGAPDYKWAR-EADLNHIP 323


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score =  161 bits (390), Expect = 6e-40
 Identities = 103/267 (38%), Positives = 132/267 (49%), Gaps = 21/267 (7%)

Query: 5   HHMLLYGCSEPGSNDSVWNCGEMQRNVIDEIYSTASPCRSGSQIVYAWARDAPSLHLPKD 64
           HHMLLYGC+ P S    W   E                  GS I+YAWAR+AP+L LPKD
Sbjct: 75  HHMLLYGCTMPASEQGFWRGME------------TCGWGGGSYILYAWARNAPNLVLPKD 122

Query: 65  VGFLVG-QGSPIKYLVLQVHYMHRFPKGHTDNSGVFLKYTKAHMPRQAGVILLGTSGIIM 123
           V F VG +   IKY VLQVHY   F     D SGV +  ++      A V+L  +   I 
Sbjct: 123 VAFSVGHEQDGIKYFVLQVHYAQPFAGEVHDFSGVTMHISQKKPMNLAAVMLFVSGTPIP 182

Query: 124 PNMVEHMETACTMTEDKT-IHPFAFRTHTHSLGTLVSGYVVHRNKDGDEWTLLGKKNPQL 182
           P +         M E  T IHPFAFRTHTH++G LVS +  H   DG  WT +GK+NPQ 
Sbjct: 183 PQLPAFQNNITCMFESSTPIHPFAFRTHTHAMGRLVSAFFKH---DG-HWTKIGKRNPQW 238

Query: 183 PQMFYPTENRDPIKKNDVLAARCTMNN-SHEYVVKIGATNQDEMCNFYLM--YWVENDTP 239
           PQ+F    ++  I   D ++A C  ++      V +GA   DEMCNFY+M  Y  + D P
Sbjct: 239 PQLFEGIPSKLMIGSGDQMSASCRFDSMDKNRTVNMGAMGVDEMCNFYMMFHYDAKLDNP 298

Query: 240 LKQKYCFTAGPPNYYWSEAHENFNWIP 266
             Q        P+       + F  +P
Sbjct: 299 YPQGAICAKDYPSKMIDYPKDGFELLP 325


>Z99942-3|CAB17071.2|  585|Caenorhabditis elegans Hypothetical
           protein H13N06.6 protein.
          Length = 585

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 62/272 (22%), Positives = 107/272 (39%), Gaps = 28/272 (10%)

Query: 2   HTAHHMLLYGCSEPGSNDSVWNCGEMQRNVIDEIYSTASPCRSGSQIVYAWARDAPSLHL 61
           H  HHM ++ C +     S  +C + ++             +S S ++ AWA     +H 
Sbjct: 237 HLVHHMEIFMCRDEVEEWS-GSCNDPKK---------PPKSKSCSHVIAAWAMGEGPIHY 286

Query: 62  PKDVGFLVGQGSPIKYLVLQVHYMH-RFPKGHTDNSGVFLKYTKAHMPRQAGVILLG--- 117
           PK+ G  +G      Y+++++HY +    KG  D+SG     T       AG++ LG   
Sbjct: 287 PKEAGLPIGGKGKNAYVMVEIHYNNPELHKGVIDSSGFQFFVTGQLRKYDAGIMELGLIY 346

Query: 118 -TSGIIMPN-----MVEHMETACTMT-EDKTIHPFAFRTHTHSLGTLVSGYVVHRNKDGD 170
             +  + PN     M  +  + CT    ++ I+ FA + H H  G  +      + + G 
Sbjct: 347 SDANSVPPNQKAWAMNGYCPSQCTKNLPEEGINIFASQLHAHLTGRKL---FTSQYRSGV 403

Query: 171 EWTLLGKKNPQLPQMFYPTENRDPIK--KNDVLAARCTMNNSHEYVVKIGATN-QDEMCN 227
               + +     P   +  + R  +K    D L   C  +      V  G     DEMC 
Sbjct: 404 RIGDVNRDEHYSPHWQHLQQLRPVVKVMPGDTLVTTCVYDTRKRSKVTFGGYRIVDEMCV 463

Query: 228 FYLMYWVENDTPLKQKYCFTAGPPNYYWSEAH 259
            Y+ Y+  +D  +  K   +      Y+SE H
Sbjct: 464 NYIYYYPASDVEV-CKSAISNSTLRAYFSERH 494


>AF026213-10|AAB71301.1|  478|Caenorhabditis elegans Protein kinase
           protein 9, isoform a protein.
          Length = 478

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 188 PTENRDPIKKNDVLAARCTMNNSHEYVVKIGATNQD 223
           PTEN D +K  D+L     ++N  EY+  IG  ++D
Sbjct: 281 PTENPDGLKIKDLLMFSWQISNGLEYLNNIGCIHRD 316


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 188 PTENRDPIKKNDVLAARCTMNNSHEYVVKIGATNQD 223
           PTEN D +K  D+L     ++N  EY+  IG  ++D
Sbjct: 418 PTENPDGLKIKDLLMFSWQISNGLEYLNNIGCIHRD 453


>Z67755-3|CAA91757.1|  336|Caenorhabditis elegans Hypothetical
           protein F54F7.4 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 232 YWVENDTPLKQKYCFTAGPPNYY-----WSEAHENFNWIPDLE 269
           YW E   PL         P +YY      S   E+FNWIP  E
Sbjct: 248 YWTERTVPLPPGLVVPRRPLDYYNIIPNLSPPPEDFNWIPPNE 290


>AF016447-10|AAG24008.1|  314|Caenorhabditis elegans Hypothetical
           protein C54F6.3 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 19  DSVWNCGEMQRNVIDEIYS 37
           ++ WNCGE  R V+ EIY+
Sbjct: 154 NACWNCGEDMRCVVKEIYN 172


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,983,872
Number of Sequences: 27539
Number of extensions: 361099
Number of successful extensions: 609
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 9
length of query: 273
length of database: 12,573,161
effective HSP length: 80
effective length of query: 193
effective length of database: 10,370,041
effective search space: 2001417913
effective search space used: 2001417913
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)