GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002587-TA|BGIBMGA002587-PA|IPR000323|Copper type II,
ascorbate-dependent monooxygenase, core, IPR000720|Peptidyl-glycine
alpha-amidating monooxygenase, IPR008977|PHM/PNGase F Fold
         (273 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.8  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   9.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   9.0  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 116 LGTSGIIMPNMVEHMETACTMTEDKTIHP 144
           LG + ++ P M E   TA    ED+   P
Sbjct: 414 LGAAALVAPGMEEPTNTASGSNEDEDETP 442


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 44  SGSQIVYAWARDAPSLHL---PKDVGFLVGQGSPI 75
           S  + +Y + R AP+ ++   PK    LVG G+ I
Sbjct: 943 SDGEPLYVFVRSAPNFYMPSEPKAPMILVGPGTGI 977


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
          protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 23 NCGEMQRNVIDEIYSTASPC 42
          +  E++RN+ D + +  SPC
Sbjct: 59 DAAELKRNLPDALENECSPC 78


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 89   PKGHTDNSGVFLKYTKAHMPRQAG 112
            P GH  N+    +     MPRQ G
Sbjct: 1762 PVGHPTNASAHSRSGSQSMPRQNG 1785


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 26  EMQRNVIDEIYSTASPCRSGSQIVYAWARD 55
           ++  N  D  Y+  S     + +VY+WA++
Sbjct: 178 DVDPNNCDNTYAYISDLSGYALVVYSWAKN 207


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
          protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 23 NCGEMQRNVIDEIYSTASPC 42
          +  E++RN+ D + +  SPC
Sbjct: 59 DAAELKRNLPDALENECSPC 78


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 252 NYYWSEAHENFNWIPDLEAST 272
           NY W     + +W P+ E  T
Sbjct: 187 NYNWEHKETHIDWQPEDEECT 207


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,355
Number of Sequences: 429
Number of extensions: 4089
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 273
length of database: 140,377
effective HSP length: 57
effective length of query: 216
effective length of database: 115,924
effective search space: 25039584
effective search space used: 25039584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)