GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002586-TA|BGIBMGA002586-PA|IPR011701|Major facilitator
superfamily MFS_1
         (847 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical ...    62   2e-09
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    31   2.6  
Z83236-5|CAB05781.1|  191|Caenorhabditis elegans Hypothetical pr...    31   3.4  
AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    31   3.4  
Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical pr...    30   5.9  
Z22177-5|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    30   7.9  

>AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical
           protein R13A5.9 protein.
          Length = 630

 Score = 61.7 bits (143), Expect = 2e-09
 Identities = 38/179 (21%), Positives = 73/179 (40%)

Query: 440 ADNLLRDLVNIIKMPHXXXXXXXXXALGNFWGFIESYLFIYLKELGAPNFLLGITVTVGT 499
           ++N L   +  +   H          +G   G + S+L+ +L+++G    L GI   V  
Sbjct: 369 SENSLLLAMKALASMHILLFFVSVVVMGGGAGLVFSFLYWHLQDIGGSPVLFGILSVVNH 428

Query: 500 LSSIPFLYGADAITARIGHVNVIIVAFFSHAARLVGYSFIENSWWCFPFEAMESLSVHLM 559
            S I   +    +  + GHV V+ +    +  R +  S ++N W   P + ++   +  +
Sbjct: 429 ASEIITYFYVFKLINKYGHVRVMYLCLAVNFFRFMALSILDNPWMVLPLQILQGACLATV 488

Query: 560 WVAAATYCAMLAPKSLLATLIGVLGMAHXXXXXXXXXXXXXXXIAQLGTREAFRYMGLI 618
           W  A++Y +++AP          L + +               I+ +GTR  F   GLI
Sbjct: 489 WSCASSYISLVAPPHAKQHAQYALQVGYHGIGKGLGSIIGGSVISIIGTRTTFVIYGLI 547



 Score = 36.3 bits (80), Expect = 0.091
 Identities = 16/61 (26%), Positives = 31/61 (50%)

Query: 52  YGATASLLPYLTIHMQSIGLTVPEISFVYLALPFTTFLSPPITGFLVDRFGEYKPVVITA 111
           + +  SL P L ++ + +G+T  +  F+  + P   FLS P       RF + K +++ +
Sbjct: 32  FASFGSLFPLLAVYFKQLGMTAAQAGFLIGSRPIVEFLSGPFWSQFASRFRKQKLLLLFS 91

Query: 112 L 112
           L
Sbjct: 92  L 92


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 31.5 bits (68), Expect = 2.6
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 762 YKQNHSAPKLAMAGLAQRNNISQPILSEFDSRRRDSIPEEA-DEDKLMPPAKAPTKTKSD 820
           +K  H +  +A  G+   ++  Q +     S++R   P  A     +  P +AP     D
Sbjct: 244 FKNQHPSNMVAPIGMTMHHHPQQNV---HPSQQRGGAPAAARGSPNVKRPTEAPPPVNLD 300

Query: 821 HLPPP 825
           HLPPP
Sbjct: 301 HLPPP 305


>Z83236-5|CAB05781.1|  191|Caenorhabditis elegans Hypothetical
           protein K10H10.5 protein.
          Length = 191

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 800 EEADEDKLMPPAKAPTKTKSDHLPPPPSYDEAINEHRKSWHSDD 843
           EE DE+K+    K P +   D  P PP+ +E     + S   +D
Sbjct: 82  EEDDEEKVAHHKKKPIEEDDDEFPLPPNSEEVAEASKSSKKEED 125


>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 181 FKPPESPFTKPSGDDENDDLDFHISHKIQPP--XXXXXXXXXXTDSDEDYNDAAFFLIEV 238
           F     P    SG+DE D+ +     + QPP             DSD+D  D      E 
Sbjct: 217 FAKQTKPVEDDSGEDEEDEEES--DEEPQPPKKTAKSAIATAAEDSDDDEEDDDEEEEES 274

Query: 239 HDDLGEPKEQLGIEMERDEDDQ 260
            DD  + K+ + +E   DE+D+
Sbjct: 275 DDDAPQVKKSVAVE--EDEEDE 294


>Z46241-1|CAA86323.1|  462|Caenorhabditis elegans Hypothetical
           protein C38D4.1a protein.
          Length = 462

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 798 IPEEADEDKLMPPAKAPTKTKSDHLPPPPSYDEAINEHRKSWHSDDSTP 846
           + E+A ++KL  P ++P     ++   PPS    I + +K W S+ + P
Sbjct: 406 VTEKATKEKLQTPKQSPMPGTPENTSLPPS---LIKKKKKEWTSEQAAP 451


>Z22177-5|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
           protein ZK512.5 protein.
          Length = 1232

 Score = 29.9 bits (64), Expect = 7.9
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 813 APTKTKSDHLPPP-PSYDEAINEHRKSWHSDDSTP 846
           AP +    H+P P P  +++I+   K WH +   P
Sbjct: 814 APVQESQQHVPQPQPVENKSISSEAKKWHDEHQAP 848


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,708,353
Number of Sequences: 27539
Number of extensions: 892387
Number of successful extensions: 2539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2532
Number of HSP's gapped (non-prelim): 11
length of query: 847
length of database: 12,573,161
effective HSP length: 88
effective length of query: 759
effective length of database: 10,149,729
effective search space: 7703644311
effective search space used: 7703644311
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)