GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002585-TA|BGIBMGA002585-PA|undefined
         (63 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    24   2.2  
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    23   3.8  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    23   6.6  

>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 16  LSEMCEKVIREPAVDL 31
           +S++CEK IREP + L
Sbjct: 390 ISKLCEKYIREPNIIL 405


>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 8   QKLQGPDVLSEMCEKVIREPA 28
           Q+L  PDVL+ +   V REPA
Sbjct: 195 QQLLPPDVLASIRADVTREPA 215


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
          factor complex subunit Rna14|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 733

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 14 DVLSEMCEKVIREPAVDLKAWIRLTTKQNCSGRH 47
          D++ ++ +K+   P  D+ +W  L  +    G+H
Sbjct: 55 DLVGQLRDKIQENPN-DISSWYALVEEYGSKGKH 87


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 295,953
Number of Sequences: 5004
Number of extensions: 8417
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 63
length of database: 2,362,478
effective HSP length: 43
effective length of query: 20
effective length of database: 2,147,306
effective search space: 42946120
effective search space used: 42946120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)