Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002584-TA|BGIBMGA002584-PA|undefined
         (108 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY050629-1|AAK95565.1|  633|Homo sapiens peptide/histidine trans...    31   0.94 
AY038999-1|AAK72099.1|  577|Homo sapiens peptide/histidine trans...    30   1.6  
AB037808-1|BAA92625.1|  950|Homo sapiens KIAA1387 protein protein.     29   2.9  
AY762229-1|AAW83120.1|  623|Homo sapiens chronic myelogenous leu...    28   5.0  
AB018254-1|BAA34431.2|  661|Homo sapiens KIAA0711 protein protein.     28   5.0  

>AY050629-1|AAK95565.1|  633|Homo sapiens peptide/histidine
          transporter protein.
          Length = 633

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 25 AGEVASPGGARTSGVAALMAGATRGRVPDACGAIVTAD 62
          AGE A   GAR +  AA  AGA  GR+  ACGA++  +
Sbjct: 8  AGERAPLLGARRAAAAAAAAGAFAGRLL-ACGAVLLTE 44


>AY038999-1|AAK72099.1|  577|Homo sapiens peptide/histidine
          transporter protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 25 AGEVASPGGARTSGVAALMAGATRGRVPDACGAIVTAD 62
          AGE A   GAR +  AA  AGA  GR   ACGA++  +
Sbjct: 8  AGERAPLLGARRAAAAAAAAGAFAGR-RAACGAVLLTE 44


>AB037808-1|BAA92625.1|  950|Homo sapiens KIAA1387 protein
          protein.
          Length = 950

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 19 ILGSATAGEVASPGGARTSGVAALMAGATRG 49
          ++ +A AGE ASPGG R  G   + AG  RG
Sbjct: 4  VVVTAAAGEQASPGGQR-DGRVGVCAGEVRG 33


>AY762229-1|AAW83120.1|  623|Homo sapiens chronic myelogenous
           leukemia-associated protein protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 18  LILGSATAGEVASPGGARTSGVAALMAGATRGRVPDACGAIVTADTAQLS 67
           L+L  A +G +A   G R   VA ++AGA R ++P A      A   QLS
Sbjct: 186 LLLADAYSGRMA---GVRPDNVAEVVAGARRLQLPGAAQRATDAVGPQLS 232


>AB018254-1|BAA34431.2|  661|Homo sapiens KIAA0711 protein protein.
          Length = 661

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 18  LILGSATAGEVASPGGARTSGVAALMAGATRGRVPDACGAIVTADTAQLS 67
           L+L  A +G +A   G R   VA ++AGA R ++P A      A   QLS
Sbjct: 224 LLLADAYSGRMA---GVRPDNVAEVVAGARRLQLPGAAQRATDAVGPQLS 270


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.314    0.125    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,179
Number of Sequences: 224733
Number of extensions: 313804
Number of successful extensions: 870
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 73,234,838
effective HSP length: 79
effective length of query: 29
effective length of database: 55,480,931
effective search space: 1608946999
effective search space used: 1608946999
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)