GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002584-TA|BGIBMGA002584-PA|undefined
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...    25   2.6  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   4.6  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    24   4.6  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    24   6.0  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 5   TAKRVASLRSRSDLILGSATAGEVASPGGARTSGVAALMAGATRGRVPDACGAIVTADTA 64
           T+++ ASL  ++ +I+G+ T  E       + S  A     + R R+  A G ++T D  
Sbjct: 70  TSRKSASLEGKTTVIVGTVTDDERLLT-VPKLSVAALRFTKSARARILKAGGEVLTLDQL 128

Query: 65  QL 66
            L
Sbjct: 129 AL 130


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 2    KQYTAKRVASLRSRSDLILGSATAGEVASPGGARTSGVAAL----MAGATRGRVP 52
            K  + +R A +R+R   IL   TAG  +   G R SGV  L    + GA R  +P
Sbjct: 2837 KFQSRRRAARIRNRPVHILYGVTAGAASLYTGVR-SGVRGLALQPIIGARRNGLP 2890


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 470

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 38 GVAALMAGATRGRVPDACGAIVTADTAQLSTKLAGLRRSQ 77
          GV  + A +TRGR+P +        T+QL + L    RSQ
Sbjct: 38 GVEIIQAWSTRGRIPHS-----VESTSQLVSSLISNDRSQ 72


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 4   YTAKRVASLRSRSDLILGSATAGEVASPGGARTSGV--AALMAGATRGRVPDACGAIVTA 61
           Y A   +S+ S S++  GSAT+    S      S V  +A ++ A +G    A  +   +
Sbjct: 196 YVAPVSSSVASSSEISAGSATSYVPTSSSSIALSSVVASASVSAANKGVSTPAVSSAAAS 255

Query: 62  DTAQLST 68
            +A +S+
Sbjct: 256 SSAVVSS 262


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.125    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,949
Number of Sequences: 5004
Number of extensions: 7252
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 20
Number of HSP's gapped (non-prelim): 4
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)