GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002581-TA|BGIBMGA002581-PA|IPR003439|ABC transporter
related, IPR013525|ABC-2 type transporter
         (448 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...   152   4e-39
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...   152   4e-39
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    25   1.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    23   3.3  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score =  152 bits (369), Expect = 4e-39
 Identities = 96/307 (31%), Positives = 158/307 (51%), Gaps = 13/307 (4%)

Query: 1   MDKRSTKIMRAKRVEQLLGELGVMSCTKT------KLKALSGGERKRVALAVQLLNDPPI 54
           MD+  +   R  RVE+++ +L +  C  T      ++K +SGGE+KR++ A ++L +P +
Sbjct: 181 MDRDISYSQRMARVEEVISDLALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKL 240

Query: 55  LFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVHQPASGVFEMFHQIVFLANGRTAF 114
           +FCDEPT+GLDS+ A  V+  L+++A+ GK VIC++HQP+S V+ MF +++ ++ GRTAF
Sbjct: 241 MFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAF 300

Query: 115 HGTIAQADQFSGSLNYKCPLGFNAAEYYVSLLGIQIGKXXXXXXXXXXXCDEYHRSDIAA 174
            G+  +A+ F   L   CP  +N A+Y++ LL I   K           CD++ RS+I  
Sbjct: 301 LGSPEEAETFFRELEAPCPRNYNPADYFIQLLAIVPEKEESSRQAVNLICDKFERSNIGV 360

Query: 175 EIEARVGEVHDEVDYFNGTLDEKFVGFIISFPYIGHFKELDQRDIQNV--EGLLY-LTIT 231
           +I         E  Y +  +  +             FK +  R I  V  E LL  + + 
Sbjct: 361 KIALEAATTEREGGYHDIWMSGESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIKVRLL 420

Query: 232 ETIFLFIYAVFITFPSEVPILLRETASGLYSPLPYYLSKMIFWIPRAVIEPVLFGSLIFI 291
           +T+ + +    I F  +   L ++    +   L  +L+ M F    AVI  V  G L   
Sbjct: 421 QTLIISLVIGAIYFGQD---LNQDGVMNINGVLFVFLTNMTFQNVFAVIN-VFSGELPVF 476

Query: 292 VAELRGG 298
           + E R G
Sbjct: 477 LQEHRNG 483



 Score =  137 bits (332), Expect = 1e-34
 Identities = 74/250 (29%), Positives = 133/250 (53%), Gaps = 5/250 (2%)

Query: 194 LDEKFVGFIISFPYIGHFKELDQRDIQNVEGLLYLTITETIFLFIYAVFITFPSEVPILL 253
           L    +  +I   Y G  ++L+Q  + N+ G+L++ +T   F  ++AV   F  E+P+ L
Sbjct: 420 LQTLIISLVIGAIYFG--QDLNQDGVMNINGVLFVFLTNMTFQNVFAVINVFSGELPVFL 477

Query: 254 RETASGLYSPLPYYLSKMIFWIPRAVIEPVLFGSLIFIVAELRG-GFVGWLGFCFVCVLC 312
           +E  +G+Y P  Y++SK +   P  +I PV+  S+ + +  L   GF  ++  C + +L 
Sbjct: 478 QEHRNGMYRPSIYFISKTLAESPIFIIIPVILTSVCYFMIGLNSQGFRFYIA-CGIMILV 536

Query: 313 ANYANAYGSFLSSVFDKMETAALVSVPFDLIGTMFSGLYLNLGSVSPYFSWLRFVSAFYY 372
           AN A ++G  +S V   +  A  +  P  +   +F G +LN+ S+  YF WL F+S F Y
Sbjct: 537 ANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKWLSFLSWFRY 596

Query: 373 GIESISILQWDSIESIDCVKLPGIPCIKTGPDVLNRYGYSESHFWRNCCCLATMYCVAHF 432
           G  ++ I QW+++ +I C     +PC K G  +L  + +SE+ F  +   LA +      
Sbjct: 597 GNGALMINQWENVTNIQCPN-ADLPCPKDGHVILETFHFSEADFVMDVVMLAVLIVGFRL 655

Query: 433 VAFIMVIKRS 442
           VAF+ ++ ++
Sbjct: 656 VAFLALLVKT 665


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score =  152 bits (369), Expect = 4e-39
 Identities = 96/307 (31%), Positives = 158/307 (51%), Gaps = 13/307 (4%)

Query: 1   MDKRSTKIMRAKRVEQLLGELGVMSCTKT------KLKALSGGERKRVALAVQLLNDPPI 54
           MD+  +   R  RVE+++ +L +  C  T      ++K +SGGE+KR++ A ++L +P +
Sbjct: 181 MDRDISYSQRMARVEEVISDLALSKCQNTPIGILGRIKGISGGEKKRLSFAAEVLTNPKL 240

Query: 55  LFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVHQPASGVFEMFHQIVFLANGRTAF 114
           +FCDEPT+GLDS+ A  V+  L+++A+ GK VIC++HQP+S V+ MF +++ ++ GRTAF
Sbjct: 241 MFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPSSEVYSMFDKLLLMSEGRTAF 300

Query: 115 HGTIAQADQFSGSLNYKCPLGFNAAEYYVSLLGIQIGKXXXXXXXXXXXCDEYHRSDIAA 174
            G+  +A+ F   L   CP  +N A+Y++ LL I   K           CD++ RS+I  
Sbjct: 301 LGSPEEAETFFRELEAPCPRNYNPADYFIQLLAIVPEKEESSRQAVNLICDKFERSNIGV 360

Query: 175 EIEARVGEVHDEVDYFNGTLDEKFVGFIISFPYIGHFKELDQRDIQNV--EGLLY-LTIT 231
           +I         E  Y +  +  +             FK +  R I  V  E LL  + + 
Sbjct: 361 KIALEAATTEREGGYHDIWMSGESFKSPYKASCWAQFKAVLWRSILAVFKEPLLIKVRLL 420

Query: 232 ETIFLFIYAVFITFPSEVPILLRETASGLYSPLPYYLSKMIFWIPRAVIEPVLFGSLIFI 291
           +T+ + +    I F  +   L ++    +   L  +L+ M F    AVI  V  G L   
Sbjct: 421 QTLIISLVIGAIYFGQD---LNQDGVMNINGVLFVFLTNMTFQNVFAVIN-VFSGELPVF 476

Query: 292 VAELRGG 298
           + E R G
Sbjct: 477 LQEHRNG 483



 Score =  136 bits (329), Expect = 3e-34
 Identities = 74/250 (29%), Positives = 132/250 (52%), Gaps = 5/250 (2%)

Query: 194 LDEKFVGFIISFPYIGHFKELDQRDIQNVEGLLYLTITETIFLFIYAVFITFPSEVPILL 253
           L    +  +I   Y G  ++L+Q  + N+ G+L++ +T   F  ++AV   F  E+P+ L
Sbjct: 420 LQTLIISLVIGAIYFG--QDLNQDGVMNINGVLFVFLTNMTFQNVFAVINVFSGELPVFL 477

Query: 254 RETASGLYSPLPYYLSKMIFWIPRAVIEPVLFGSLIFIVAELRG-GFVGWLGFCFVCVLC 312
           +E  +G+Y P  Y++SK +   P  +I PV   S+ + +  L   GF  ++  C + +L 
Sbjct: 478 QEHRNGMYRPSIYFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYIA-CGIMILV 536

Query: 313 ANYANAYGSFLSSVFDKMETAALVSVPFDLIGTMFSGLYLNLGSVSPYFSWLRFVSAFYY 372
           AN A ++G  +S V   +  A  +  P  +   +F G +LN+ S+  YF WL F+S F Y
Sbjct: 537 ANVAISFGYLISCVSRSVSMALSIGPPLVIPFLLFGGFFLNVSSIPIYFKWLSFLSWFRY 596

Query: 373 GIESISILQWDSIESIDCVKLPGIPCIKTGPDVLNRYGYSESHFWRNCCCLATMYCVAHF 432
           G  ++ I QW+++ +I C     +PC K G  +L  + +SE+ F  +   LA +      
Sbjct: 597 GNGALMINQWENVTNIQCPN-ADLPCPKDGHVILETFHFSEADFVMDVVMLAVLIVGFRL 655

Query: 433 VAFIMVIKRS 442
           VAF+ ++ ++
Sbjct: 656 VAFLALLVKT 665


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 13/51 (25%), Positives = 27/51 (52%)

Query: 266 YYLSKMIFWIPRAVIEPVLFGSLIFIVAELRGGFVGWLGFCFVCVLCANYA 316
           YY++     +   +++  L+ +LIF ++ L+  F G  G  F+ +L   +A
Sbjct: 500 YYVNVTFPHLFNGLVDYSLWKALIFQISNLQTTFGGTFGDTFIILLSMAFA 550


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 251 ILLRETASGLYSPLPYYLSK----MIFWIPRAVIEPVLFGSLIFIVA 293
           IL+  T   ++  +PY+  +    +I W P    +PV+F  + FI+A
Sbjct: 127 ILIIPTCVAMFI-VPYFQDRREMPLIVWFPFDYKQPVVFDLVYFILA 172


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.142    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,101
Number of Sequences: 317
Number of extensions: 4479
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 448
length of database: 114,650
effective HSP length: 59
effective length of query: 389
effective length of database: 95,947
effective search space: 37323383
effective search space used: 37323383
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)