Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002581-TA|BGIBMGA002581-PA|IPR003439|ABC transporter
related, IPR013525|ABC-2 type transporter
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 81 2e-16
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 65 2e-11
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 49 1e-06
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 47 6e-06
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 46 1e-05
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 45 2e-05
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 42 2e-04
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 42 2e-04
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 40 0.001
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 39 0.001
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 39 0.001
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 38 0.004
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 37 0.005
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 37 0.007
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 31 0.25
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 31 0.43
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 30 0.76
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 1.3
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 29 1.3
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 28 3.1
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 27 4.0
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 27 4.0
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 27 4.0
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 27 7.0
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 26 9.3
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 81.4 bits (192), Expect = 2e-16
Identities = 43/117 (36%), Positives = 70/117 (59%), Gaps = 7/117 (5%)
Query: 38 ERKRVALAVQLLNDPPIL-FCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVHQPASG 96
+RKR + V+L P +L F DEPT+GLDS +A ++V LRKLA G+ ++C++HQP++
Sbjct: 1027 QRKRATIGVELAAKPALLLFLDEPTSGLDSQSAWSIVCFLRKLADAGQAILCTIHQPSAV 1086
Query: 97 VFEMFHQIVFL-ANGRTAFHGTIAQ-----ADQFSGSLNYKCPLGFNAAEYYVSLLG 147
+F+ F +++ L G+T + G I + + F CP N AEY + ++G
Sbjct: 1087 LFDQFDRLLLLQKGGKTVYFGDIGEHSKTLLNYFESHGAVHCPDDGNPAEYILDVIG 1143
Score = 55.6 bits (128), Expect = 1e-08
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 31 LKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLV-ICS 89
++ +SGGERKRV ++ P I D T GLDS A V+ LR A K+ +
Sbjct: 306 VRGVSGGERKRVTISEGFATRPTIACWDNSTRGLDSSTAFEFVNVLRTCANELKMTSFVT 365
Query: 90 VHQPASGVFEMFHQIVFLANGRTAFHGTIAQADQFSGSLNYKC 132
+Q + ++++F +I L GR ++G +A Q+ + + C
Sbjct: 366 AYQASEKIYKLFDRICVLYAGRQIYYGPADKAKQYFLDMGFDC 408
Score = 53.2 bits (122), Expect = 7e-08
Identities = 41/184 (22%), Positives = 87/184 (47%), Gaps = 8/184 (4%)
Query: 213 ELDQRDIQNVEGLLYLTITETIFLFIYAVFITFPSEVPILLRETASGLYSPLPYYLSKMI 272
+L+ D+ + G+L+ +I + + F S+ PI+ + AS LY P +S +I
Sbjct: 563 KLNTVDVFSRGGVLFFSILFCALQSLSEIANMF-SQRPIIAKHRASALYHPAADVISSLI 621
Query: 273 FWIPRAVIEPVLFGSLIFIVAELR---GGFVGWLGFCFVCVLCANYANAYGSFLSSVFDK 329
+P I +F +++ + L+ GGF + F F+ C +A+ L+ +
Sbjct: 622 VDLPFRFINISVFSIVLYFLTNLKRTAGGFWTYFLFLFIGATC---MSAFFRSLAGIMPN 678
Query: 330 METAALVSVPFDLIGTMFSGLYLNLGSVSPYFSWLRFVSAFYYGIESISILQWDSIESID 389
+E+A+ + L +++G + V +F W+ ++ +G ES+ I ++ + +
Sbjct: 679 VESASALGGIGVLAIAIYTGYAIPNIDVGWWFRWIAYLDPLQFGFESLMINEFKA-RQFE 737
Query: 390 CVKL 393
C +L
Sbjct: 738 CSQL 741
Score = 31.1 bits (67), Expect = 0.33
Identities = 44/191 (23%), Positives = 83/191 (43%), Gaps = 20/191 (10%)
Query: 198 FVGFIISFPYIGHFKELDQRDIQNVEGLLYLTITETIFLF--IYAVFITFPSEVPILLRE 255
F G I F + + L ++IQN +++ + L + FI + + RE
Sbjct: 1230 FAGLFIGFTFYN--QGLGVQNIQNKLFAVFMATVLAVPLINGLQPKFIELRNVFEV--RE 1285
Query: 256 TASGLYSPLPYYLSKMIFWIPRAVIEPVLFGSLIFIVAELR------GGFVG--WLGFCF 307
S +YS + + S +I IP ++ LF F + G G WL + F
Sbjct: 1286 KPSNIYSWVAFVFSAIIVEIPFNLVFGTLFFLCWFYPIKFYKHIHHPGDKTGYAWLLYMF 1345
Query: 308 VCVLCANYANAYGSFLSSVFDKMETAALV-SVPFDLIGTMFSGLYLNLGSVSPYFSWLRF 366
+ Y + +G ++S +TA++V S+ F + T F+G+ ++ ++ W+
Sbjct: 1346 FQM----YFSTFGQAVASACPNAQTASVVNSLLFTFVIT-FNGVLQPNSNLVGFWHWMHS 1400
Query: 367 VSAFYYGIESI 377
++ F Y IE +
Sbjct: 1401 LTPFTYLIEGL 1411
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 64.9 bits (151), Expect = 2e-11
Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 32 KALSGGERKRVALAVQLLNDP-PILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSV 90
K LS ++ +++AV+L P IL DEP GLDS +A +V L+KLA G ++CSV
Sbjct: 897 KGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARSGLSILCSV 956
Query: 91 HQPASGVFEMFHQIVFL-ANGRTAFHGTIAQADQFSGSLNY 130
QP+S + E+F ++ L NG T ++ T+ + S +NY
Sbjct: 957 SQPSSRILELFDMMLILDLNGNTVYYDTMGR--DLSKLVNY 995
Score = 44.8 bits (101), Expect = 2e-05
Identities = 36/181 (19%), Positives = 76/181 (41%), Gaps = 21/181 (11%)
Query: 260 LYSPLPYYLSKMIFWIPRAVIEPVLFGSLIFIVAELRGGFVGWLGFCFVCVLCANYANAY 319
LY P + + P ++ ++ +++ +++L+ + F ++ +A
Sbjct: 500 LYHPSAALMGSSLVEFPMRIVVVTMYDIIVYFLSDLKRNARSFFIFYLFTIVITFCMSAV 559
Query: 320 GSFLSSVFDKMETAALVSVPFDLIGTMFSGLYLNLGSVSPYFSWLRFVSAFYYGIESISI 379
F++ + E AAL+ L+ +F G + + + +F W+ + + YG ESI +
Sbjct: 560 FRFIALLSTTAEIAALIGGIGALVLIIFCGAVMPVQYIGWWFRWIAYANPVNYGYESIML 619
Query: 380 LQWDSIESIDCVKLPGIP---------CI----KTGPDVLNRYGYSE-------SHFWRN 419
++D E I C + P C+ +TG +++ Y Y + WRN
Sbjct: 620 NEFDGRE-IPCSLMAPAPDTAPIENNFCLATAGRTGTSIVSGYQYLQVVYQYKADFLWRN 678
Query: 420 C 420
C
Sbjct: 679 C 679
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 31 LKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIG-GKLVICS 89
L+ + G++ +V +A + P I D DS + ++SR++ L+ G ++
Sbjct: 216 LRVFNSGDQIKVDVAQTMCARPLIQCWDNNMRDFDSISVIDILSRIKVLSHKLGTTLVAI 275
Query: 90 VHQPASGVFEMFHQIVFLANGRTAFHGTIAQADQFSGSLNYKCPLGFNAAEYYVSL 145
V Q + +F MF + + G F+G ++ + L + E+ SL
Sbjct: 276 VSQASDRIFHMFDMVTLMYEGEQIFYGPTSRLKPYFLDLGFIPAKHSTTVEFVTSL 331
Score = 26.2 bits (55), Expect = 9.3
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 297 GGFVGWLGFCFVCVLCANYANAYGSFLSSVFDKMETAALVSVPFDLIGTMFSGLYLNLGS 356
GGF WL + ++ Y G ++++ + TA+++S + F+G+ G
Sbjct: 1206 GGFA-WL----MLMIFTLYYTTLGIGIATISPSIGTASIISGTAFVFIQYFNGMIQLPGV 1260
Query: 357 VSPYFSWLRFVSAFYYGIESI 377
+ ++ W+ +S + Y +E +
Sbjct: 1261 IVGFWKWMDALSPYKYFLEGM 1281
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 49.2 bits (112), Expect = 1e-06
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 34 LSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVHQP 93
LSGGE++RVA+A +L DP I+ DE T+ LD+ + + L +LA G+ I H+
Sbjct: 721 LSGGEKQRVAVARAILKDPSIILLDEATSALDTNTERQIQAALNRLA-SGRTAIVIAHRL 779
Query: 94 ASGVFEMFHQIVFLANGRTAFHGT 117
++ I+ ++NGR GT
Sbjct: 780 ST--ITNADLILCISNGRIVETGT 801
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 46.8 bits (106), Expect = 6e-06
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 10/111 (9%)
Query: 18 LGELGVMS-CTKTKLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRL 76
LG GV K+ LSGG++ RVA A L +P IL DEPT LD + A+ +
Sbjct: 620 LGAFGVSGPLALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAV 679
Query: 77 RKLAIGGKLV---ICSVHQPASGVFEMFHQIVFLANGRTAFHGTIAQADQF 124
++ G LV + + + + +++ H +V + F GTI+Q +F
Sbjct: 680 KRFQGGVILVSHDVDFLDKTCTSIWQCDHNVV------SKFDGTISQYKKF 724
Score = 32.7 bits (71), Expect = 0.11
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 32 KALSGGERKRVALAVQLLNDPPILFCDEPTTGLD 65
K SGG R R++LA L P +L DEP+ LD
Sbjct: 353 KTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLD 386
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 46.0 bits (104), Expect = 1e-05
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 27 TKTKLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLR 77
T K +LSGG+++R+ALA LL D IL DEPT+ LD + V+ +R
Sbjct: 564 TPCKEASLSGGQQQRIALARALLRDTEILILDEPTSALDPITKNLVMDAIR 614
Score = 39.1 bits (87), Expect = 0.001
Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 32 KALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVH 91
K SGG+ +R+A A LL +P +L DE T+ LDS ++ + ++ L+ V+ H
Sbjct: 1234 KNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLEKTIQNLSC---TVLIITH 1290
Query: 92 QPASGVFEMFHQIVFLANG 110
QP+ + ++ +I+ + +G
Sbjct: 1291 QPS--LMKLADRIIVMDSG 1307
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 44.8 bits (101), Expect = 2e-05
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 30 KLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICS 89
K +LSGG+++R+A+A L+ +P IL DE T+ LDS + VV A G+ +
Sbjct: 1255 KGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDS-HSEKVVQEALNAASQGRTTVAI 1313
Query: 90 VHQPAS 95
H+ +S
Sbjct: 1314 AHRLSS 1319
Score = 40.3 bits (90), Expect = 5e-04
Identities = 16/33 (48%), Positives = 26/33 (78%)
Query: 34 LSGGERKRVALAVQLLNDPPILFCDEPTTGLDS 66
+SGG+++R+A+A +++DP IL DE T+ LDS
Sbjct: 568 MSGGQKQRIAIARAVISDPKILLLDEATSALDS 600
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 34 LSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIG 82
+SGGE++R+A++ LL +P ILF DE T+ LD+ A++ + L G
Sbjct: 580 ISGGEKQRLAVSRLLLKNPEILFFDEATSALDTNTERALLRNINDLIKG 628
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 41.5 bits (93), Expect = 2e-04
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 34 LSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSV-HQ 92
LSGG+++R+A+A LL +P L DE T+ LD A V ++ L + ++ H+
Sbjct: 620 LSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHK 679
Query: 93 PASGVFEMFHQIVFLANGRTAFHGTIAQADQFSGSLNYK 131
A+ QI+ + +G+ G+ + + G+ YK
Sbjct: 680 LAT--IRRADQIIVVGDGKVLEQGSFERLSR-PGTNFYK 715
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 39.5 bits (88), Expect = 0.001
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 30 KLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLR-KLAIGGKLVIC 88
++ A+S GER+RV L + LL +L DE T LD A + +++ L+ + + ++
Sbjct: 125 RMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARADLLNFLQEETEVRNATIVY 184
Query: 89 SVHQPASGVFEMFHQIVFLANGRTAFHGTIAQ 120
+ H G+ E +V L+ GR +G I++
Sbjct: 185 ATH-IFDGLAEWPTHLVHLSLGRIVDYGPISK 215
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 39.1 bits (87), Expect = 0.001
Identities = 26/113 (23%), Positives = 50/113 (44%)
Query: 4 RSTKIMRAKRVEQLLGELGVMSCTKTKLKALSGGERKRVALAVQLLNDPPILFCDEPTTG 63
R + ++ V++ + + L LS G+ +R LA +L+ P +L DEP G
Sbjct: 119 RGNEKFASQHVQEAASMTQLSHLLPSSLINLSNGQSRRAMLASKLVQRPQLLLLDEPYAG 178
Query: 64 LDSWAASAVVSRLRKLAIGGKLVICSVHQPASGVFEMFHQIVFLANGRTAFHG 116
LD + S + S L +++ I +P + + ++ L N + + G
Sbjct: 179 LDVTSRSVLSSLLGEMSNHCSPKIVLSLRPQDKIPDFITHVLELKNKKITYQG 231
Score = 26.2 bits (55), Expect = 9.3
Identities = 12/57 (21%), Positives = 26/57 (45%)
Query: 10 RAKRVEQLLGELGVMSCTKTKLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDS 66
R + +L E + L ++S G ++ + ++ P ++ DEP G+D+
Sbjct: 382 RLAAISSILEEFELKDIKDKPLSSISVGMQRFILFCRAIVKQPRLVVLDEPFQGVDT 438
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 39.1 bits (87), Expect = 0.001
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 31 LKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVI 87
+ +LSGG++ +V +A L N+P +L DEPT LD A + +R GG ++I
Sbjct: 908 ISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRDALGGLAVAIRDWE-GGVVMI 963
Score = 30.7 bits (66), Expect = 0.43
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 33 ALSGGERKRVALAVQLLNDPPILFCDEPTTGLD 65
+LSGG + ++ LA +L IL DEPT LD
Sbjct: 562 SLSGGWKMKLELARAMLQKADILLLDEPTNHLD 594
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 37.5 bits (83), Expect = 0.004
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 12 KRVEQLLGELGVMS--CTKTKLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAA 69
K +E+ LG+ + + +++K LSGG++ ++ LA P ++ DEPT LD +
Sbjct: 880 KEIEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSL 939
Query: 70 SAVVSRLRKLAIGGKLVICSVHQPASGVFE 99
A+ L+ GG +++ + G+ E
Sbjct: 940 GALSKGLKNFG-GGVVLVTHSREFTEGLTE 968
Score = 33.5 bits (73), Expect = 0.061
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 33 ALSGGERKRVALAVQLLNDPPILFCDEPTTGLD 65
+LSGG + ++AL + +P IL DEPT LD
Sbjct: 548 SLSGGWKMKLALTRAMFKNPDILLLDEPTNHLD 580
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 37.1 bits (82), Expect = 0.005
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 32 KALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVH 91
K +SGG R RVAL+ L P +L DEPT LD AVV LA K+++ + H
Sbjct: 219 KDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLD---LEAVVWLENYLAKYDKILVVTSH 275
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 36.7 bits (81), Expect = 0.007
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 34 LSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVI-C---- 88
LSGG R R+ALA L P ++ DEPT LD A + + L G L+I C
Sbjct: 421 LSGGWRMRIALARILFIKPTLMMLDEPTNHLDLEAVAWLEEYLTHEMEGHTLLITCHTQD 480
Query: 89 SVHQPASGVFEMFHQ 103
++++ + + ++HQ
Sbjct: 481 TLNEVCTDIIHLYHQ 495
Score = 35.5 bits (78), Expect = 0.015
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 14 VEQLLGELGVMSCTKT-KLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAV 72
+ +++G G+ ++ + LS G+R+RV A + P IL DEPT LD A+
Sbjct: 692 MRRIVGRYGLTGKSQVIPMGQLSDGQRRRVLFAFLGMTQPHILLLDEPTNALDIDTIDAL 751
Query: 73 VSRLRKLAIGGKLVI 87
L GG + I
Sbjct: 752 ADALNNFD-GGVVFI 765
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 31.5 bits (68), Expect = 0.25
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 35 SGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVHQPA 94
S G+R+ +ALA L+ I+ DE T +D + LR A V+C H+
Sbjct: 1326 SSGQRQILALARALVRKSRIVILDESTASVDDTTDRRIQQMLR-AAFKHATVLCIAHRIK 1384
Query: 95 SGVFEMFHQIVFLANGRTAFHGT 117
+ V + +++ L +G+T G+
Sbjct: 1385 TIV--DYDKVLVLDSGKTVEFGS 1405
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 30.7 bits (66), Expect = 0.43
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 1 MDKRSTKIMRAKRVEQLLGELGVMSCTKTKLKALSGGERKRVALAVQLLNDPPILFCDEP 60
+ K + K ++ L + + ++ LSGGE +RVA+ + L + DEP
Sbjct: 423 LKKIRAAFLNGKFQSEVCKPLSIDNIIDQEVLNLSGGELQRVAICLALGMPADVYLIDEP 482
Query: 61 TTGLDS 66
+ LDS
Sbjct: 483 SAYLDS 488
Score = 29.5 bits (63), Expect = 1.00
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Query: 15 EQLLGELGVMSCTKTKLKALSGGERKRVALAVQLLNDPPILFCDEPTTGLDSWAASAVVS 74
E+++ + + ++ LSGGE +R A+A + DEP++ LD
Sbjct: 201 EEVMDHTDLQNLLNREVGHLSGGELQRFAIAAVATQKADVYMFDEPSSYLDIKQRLKAGR 260
Query: 75 RLRKLAIGGKLVICSVHQPASGVFEMFHQIVFLANGRTAFHGTI 118
+R L VI H V + V + G + +G +
Sbjct: 261 VIRSLLATTNYVIVVEHD--LSVLDYLSDFVCVLYGVPSMYGVV 302
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 29.9 bits (64), Expect = 0.76
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 31 LKALSGGERKRVAL----AVQLLNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLV 86
+ LSGG++ AL A+Q + P DE LD+ SA+ + +++++ +
Sbjct: 1094 INQLSGGQKSLCALTLIFAIQRCDPAPFNILDECDANLDAQYRSAIAAMVKEMSKTSQF- 1152
Query: 87 ICSVHQPAS-GVFEMFHQIVF 106
IC+ +P V + F+ ++F
Sbjct: 1153 ICTTFRPEMVKVADNFYGVMF 1173
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 2 DKRSTKIMRAKRVEQLLGEL--GVMSCTKTKLKALSGGERKRVALAVQLLNDPPILFCDE 59
DK+ +++ ++ + +L G+ S S G+R+ + LA LL IL DE
Sbjct: 1329 DKKIWEVLEIASLKNCISQLEDGLYSRVAEGGANFSSGQRQLICLARVLLTSTRILLLDE 1388
Query: 60 PTTGLDSWAASAVVSRLRK 78
T + + + V +RK
Sbjct: 1389 ATASVHAETDAIVQQTIRK 1407
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 29.1 bits (62), Expect = 1.3
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 198 FVGFIISFPYIGHFKELDQRDIQNV------EGLLYLTITETIFLFIYAVFITFPSE--- 248
F G ++S IG FK+L ++ NV + + F+F +AVFI+ +
Sbjct: 678 FCGILLSMCLIGTFKKLAAENLLNVMTVYPAQSIFLAWFIGITFMFEFAVFISMVRKIVR 737
Query: 249 --VPILLRETASGLYSPLPYYLSK-MIFWIPRAVIEPVLFGSLI 289
V LR+ + P+ L K M+F + + +L+ + I
Sbjct: 738 PGVLYFLRDPNDPQFHPIREILEKPMLFQLKKIGFSAILYFAFI 781
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 103 QIVFLANGRTAFHGTIAQADQFSG-SLNYKCPLGFNAAEYY 142
QIVF ANG+ AQ +SG SL LGF +A Y+
Sbjct: 861 QIVFAANGKNGIIYANAQWLSYSGLSLESSLGLGFLSAVYH 901
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 34 LSGGERKRVALAVQLLNDPPILFCDEPTTGLD 65
LSGG+++R+ALA + + I+ D+ + LD
Sbjct: 740 LSGGQKQRIALARAVYSPTSIVLMDDVFSALD 771
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 27.5 bits (58), Expect = 4.0
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 175 EIEARVGEVHDEVDYFNGTLDEKFVGFIISFPYIGHFKELDQRDIQNVE 223
++ ++ D+ N T+ ++ F+ +FP++ LD + I+N E
Sbjct: 799 DLSKEYSKISDDTSILNLTISKEEASFVGAFPFLKFTVFLDLKGIENSE 847
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 49 LNDPPILFCDEPTTGLDSWAASAVVSRLRKLAIGGKLVICSVHQPASGVFEMFHQIVF 106
++DP LF + GL + S VVS+L ++GG SV V FHQI F
Sbjct: 185 ISDP--LFKNLGADGLAIYYVSCVVSQL-VYSLGGSFFKGSVGSEMIEVIPFFHQIAF 239
>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 7.0
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 306 CFVCVLCANYANAYGSFLSSVFDKMETAALVSVPFDLIGTMFSGLYLNLGSVSPYFSWLR 365
C C+ A AN Y + +SVF + ++L+ + L+ F + +G + +++
Sbjct: 64 CADCIFTAGSANEYSAVQNSVF---QVSSLMF--YGLMMEFFGYSFDRVGCME--LAFIS 116
Query: 366 FVSAFYYGIESISIL 380
F +A Y+ I SI L
Sbjct: 117 FSAACYFNIRSIKSL 131
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.2 bits (55), Expect = 9.3
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 25 SCTKTKLKALSGGERKRVALA--VQLL--NDPPILFCDEPTTGLDSWAASAVVSRLRKLA 80
S K L LSGG+R VALA + LL P+ DE LD + ++
Sbjct: 1077 SIWKDSLAELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALDLSHTQNIGRLIKTKF 1136
Query: 81 IGGKLVICSVHQ 92
G + +I S+ +
Sbjct: 1137 KGSQFIIVSLKE 1148
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.142 0.444
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,161
Number of Sequences: 5004
Number of extensions: 80958
Number of successful extensions: 248
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 42
length of query: 448
length of database: 2,362,478
effective HSP length: 75
effective length of query: 373
effective length of database: 1,987,178
effective search space: 741217394
effective search space used: 741217394
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 55 (26.2 bits)
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