GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002579-TA|BGIBMGA002579-PA|undefined
         (115 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    28   0.43 
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   1.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   2.3  
SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...    25   3.0  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    24   5.3  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    23   9.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   9.2  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    23   9.2  

>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.9 bits (59), Expect = 0.43
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 38  QRPAHVPVQSPFLWVFLKSRVYV--NKLETLKNNIRHECENLSPE-VLAEVL-AEVMKNS 93
           QR      Q P  W++LK++VY+  N ++  +  I H+   L+P+ V A VL  +VM  S
Sbjct: 132 QRRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQ-KIAHDVLRLNPKNVEALVLRGKVMYYS 190

Query: 94  IKRAR 98
            + A+
Sbjct: 191 GENAK 195


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 46  QSPFLWVFLKSRVYVNKLETLKNN----IRHECENLSPEVLAEVLAEVMKNSIKRARKAV 101
           Q P L V L + V   +   LK +    I + CE++SPEVL+     ++   +  ARK  
Sbjct: 126 QWPDLMVTLVANVGEGQPSALKQHSLQTIGYICESVSPEVLSAQSNAILTAVVAGARKEE 185

Query: 102 NCDGARLA 109
                RLA
Sbjct: 186 PDAAVRLA 193


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 43  VPVQSPFLWVFLKSRVYVNKLETLKNNIRHECENLS 78
           +P    F    L S +Y+   +TLK N++H  EN S
Sbjct: 544 IPEDRQFTSEDLDSDMYIYDFDTLKENLKHS-ENAS 578


>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 48  PFLWVFLKSRVYVNKLETLKNNIRHECENLSPEVLAEVLAEVMKNSIKRARKAVNCDGAR 107
           PFL  +LKS+  +  LE  +N +R   +N+S + L  V++ V+K  +   R A      R
Sbjct: 273 PFLHGWLKSKGDMVNLEVARNMVR--LKNISDDDLQPVVS-VLKIFLSSHRSATRFSAIR 329


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 38  QRPAHVPVQSPFLWVFLKSRVYVNKLETLKNNIRHECENLSPEVLAEVLAEVMKNSIKRA 97
           +RP+   V++   +      +Y+ K+E LK      C+    E ++E+ A V +  ++  
Sbjct: 314 KRPSIFDVKTRVFFCKYNDPLYI-KMEKLKIITMLACDENINETISELRAYVSEVELEFV 372

Query: 98  RKAVNCDG 105
           ++ + C G
Sbjct: 373 KQTIKCLG 380


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 18  RNNSYLAISHQPVVPKANFGQRPAHVPVQSP 48
           RN+  L +   P  P +     PA  PV+ P
Sbjct: 346 RNDDLLTLQQPPRYPHSQMVMLPARSPVEVP 376


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/15 (60%), Positives = 14/15 (93%)

Query: 54   LKSRVYVNKLETLKN 68
            LKS +YV+++ETLK+
Sbjct: 1639 LKSCIYVHEMETLKH 1653


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 76  NLSPEVLAEVLAEVMKNSIKRARKAVNCDGA 106
           +LSPE L E++  +MK +  R       + A
Sbjct: 230 SLSPESLEEIIDIIMKGNANRTMSPTEANAA 260


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,211
Number of Sequences: 5004
Number of extensions: 19507
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 9
length of query: 115
length of database: 2,362,478
effective HSP length: 64
effective length of query: 51
effective length of database: 2,042,222
effective search space: 104153322
effective search space used: 104153322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)