GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002579-TA|BGIBMGA002579-PA|undefined
         (115 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963...    31   0.22 
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    28   1.6  
02_05_1307 - 35597323-35597533,35597618-35597796,35598056-355981...    27   3.6  
10_07_0126 - 13143485-13144117,13144204-13145238                       27   4.8  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    27   4.8  
12_02_0117 - 13860418-13860524,13860612-13860810,13860969-138611...    26   8.4  

>01_01_1197 -
           9630506-9630681,9630774-9630805,9630894-9630988,
           9631569-9631642,9631732-9631843,9631967-9632030,
           9632210-9632275,9632396-9632526,9632884-9633021,
           9633115-9633227,9633306-9633471,9633588-9633701,
           9633791-9633853,9633953-9634060,9634143-9634259,
           9634343-9634505,9634646-9634743,9634852-9634949,
           9635054-9635190,9635309-9635530,9635625-9635830,
           9636758-9636845,9638085-9638668
          Length = 1054

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 6   PQERRITVSIFLRNNSYLAISHQPVVPKANFGQ--RPAHVPVQSPFLWVFLKSRVYVNKL 63
           P+   ++V  +   N  + + +    P  N G+  RP + P++   L   +  + Y   L
Sbjct: 490 PEGVEVSVYEYFVKNRGIELRYSGDFPCINVGKPKRPTYFPIE---LCSLVPLQRYTKAL 546

Query: 64  ETLKNNIRHECENLSPEVLAEVLAEVMKNSIKRARKAVNCDGARLA 109
            TL+ +   E     PE    VL++V+K S   +   +N  G  +A
Sbjct: 547 STLQRSSLVEKSRQKPEERMSVLSDVLKRSNYDSEPMLNSCGISIA 592


>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 66  LKNNIRHECENLSPEVLAEVLAEVMKN 92
           L+NN+ H+   L  + + ++LAEV KN
Sbjct: 382 LRNNLSHQRPGLGSDHMPQILAEVSKN 408


>02_05_1307 -
           35597323-35597533,35597618-35597796,35598056-35598145,
           35598629-35598727,35598987-35599053,35599136-35599235,
           35599408-35599543,35599594-35599694,35599795-35599869,
           35599905-35600217
          Length = 456

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 7   QERRITVSIFLRNNSYLAISHQPVVPKANFGQRPAHVPV 45
           + +R +V IFL+   YL  + Q V+PK +  +R   +PV
Sbjct: 209 ENKRASVEIFLKAAGYLECAIQHVLPKISPEKRWKGLPV 247


>10_07_0126 - 13143485-13144117,13144204-13145238
          Length = 555

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 68  NNIRHECENLSPEVLAEVLAEVMKNSIKRARKAVNCDGARLADIIFS 114
           N++   C  L P V A V   +  + ++R   +   D A   D++ S
Sbjct: 282 NHVARRCAALVPRVQAFVRGVIRDHRLRRDSSSTAADNADFVDVLLS 328


>03_02_0870 + 11964135-11964224,11965013-11965175,11965262-11965380,
            11965971-11966083,11966179-11966234,11966320-11966417,
            11966588-11966725,11966820-11967125,11967208-11967471,
            11967587-11967754,11967838-11968056,11968115-11968158,
            11968761-11968830,11968949-11969110,11969672-11969779,
            11969873-11969910,11970121-11970265,11970800-11970926,
            11971037-11971230,11971529-11971659,11972014-11972089,
            11972218-11972328,11972465-11972647,11973264-11973407,
            11973946-11973969,11974555-11974728,11974808-11975155,
            11975232-11975561,11975776-11975961,11976052-11977026,
            11977145-11977399
          Length = 1852

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 75   ENLSPEVLAEVLAEVMKNSIKRARKAVNCDGARL 108
            ENLS  V  EVL  + K S+  A +++  D A+L
Sbjct: 1160 ENLSTAVSLEVLGIIDKFSVAAASRSITTDYAKL 1193


>12_02_0117 -
           13860418-13860524,13860612-13860810,13860969-13861148,
           13861230-13861375,13862185-13862323,13863076-13863153,
           13863654-13863722,13863806-13863925,13864792-13864875,
           13864961-13865032,13865204-13865345,13866016-13866023
          Length = 447

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 8   ERRITVSIFLRNNSYLAISHQPVVPKANFGQ 38
           E ++ V +FL   SY+ IS   VVP    G+
Sbjct: 72  EYQVCVDVFLTTQSYVDISSISVVPSTTGGR 102


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,385
Number of Sequences: 37544
Number of extensions: 103329
Number of successful extensions: 217
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 14,793,348
effective HSP length: 73
effective length of query: 42
effective length of database: 12,052,636
effective search space: 506210712
effective search space used: 506210712
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)