GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002579-TA|BGIBMGA002579-PA|undefined
         (115 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   4.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   6.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    20   8.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.4  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/27 (25%), Positives = 17/27 (62%)

Query: 84  EVLAEVMKNSIKRARKAVNCDGARLAD 110
           E++AE + ++++   K + C G +L +
Sbjct: 106 ELIAEKVAHALESGLKVIACIGEKLEE 132


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 4   YIPQERRITVSIFLRNNSYLAISHQP 29
           +IP+ERRI   I  ++ +  ++++ P
Sbjct: 667 FIPEERRIYSPITFQDVARRSVANSP 692


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 44  PVQSPFLWVFLKS 56
           P Q PF W  LK+
Sbjct: 218 PYQPPFAWKILKA 230


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 2   ELYIPQERRITVSIFLRNNS 21
           ELY+P E      I L NN+
Sbjct: 94  ELYVPSEHIWLPDIVLYNNA 113


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 19  NNSYLAISHQPVVPKANFGQRPAHVPVQSPFLWVFLKSRVYVNKLETLKNNIR 71
           ++ Y   S++  +PK++  ++  ++   +PF   + K R    +L   + N R
Sbjct: 201 DSDYTDKSNEKKIPKSSGWRKLRNIVHWTPFFQTYKKQRYPWVQLAGHQGNFR 253


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 3   LYIPQERRITVSIFLRNNSYLAISHQPVVPKANF 36
           L + QE++ ++S +    +  A+  + V+ K NF
Sbjct: 449 LNLEQEKKDSISHYHLYTNLTALRKRDVLKKGNF 482


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,658
Number of Sequences: 429
Number of extensions: 1505
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 140,377
effective HSP length: 50
effective length of query: 65
effective length of database: 118,927
effective search space:  7730255
effective search space used:  7730255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)