GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002578-TA|BGIBMGA002578-PA|IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    29   0.92 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    28   1.6  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    28   2.1  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    28   2.1  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   4.9  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   4.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   8.6  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    26   8.6  

>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 29.1 bits (62), Expect = 0.92
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 8/117 (6%)

Query: 114 LVKAWEQNARGEKLSSTVSYIADTHPFGKWENSVEGIIKGFERVAACKLSAAVSTRNQYL 173
           L K+ E ++   K S + S IA+++      +S+    K F+RV A +L  +   R+Q L
Sbjct: 197 LKKSKESSSSSNKFSVSES-IANSYS----NSSISAFTKWFDRVDASELPGSEKERHQSL 251

Query: 174 KSGLSPEESWNMTSVQLVAVSEAHCRALILSTYKAEVDRKAQHLSDPLKRVMYQLVE 230
           K     + S N+ +      ++++ R   L ++  E   +A     P  R+ Y+L E
Sbjct: 252 KLQSQSQTSKNLLAFNDAQKADSNNRDTSLKSHFVEPRTQALR---PGARLTYKLRE 305


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 37/162 (22%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 162 LSAAVSTRNQYLKSGLSPEESWNMTSVQLVAVS-EAHCRALILSTYKAEVDRKAQHLSDP 220
           L  A +T N  L + L  + S+  + ++L  ++ E      I    + + +     L   
Sbjct: 644 LDMAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESLKSISRNKEKKFEEAISSLQLE 703

Query: 221 LKRVMYQLVELYATY-WSLQKLGDLLLYTSMSESDVQQLRQNYESLLLKIRPNAVGLVDG 279
              +  QL  L +    +L+KL DL     +SE    +L ++Y+SL  ++    +  V  
Sbjct: 704 KSNIQLQLTSLTSERSLALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIE-VQN 762

Query: 280 FDFRDEILNSTL----GAYDGRVYERLMEEALKSPLNAEPVN 317
              +  I NS L       D    E L+  ++K  L A+  N
Sbjct: 763 VSSQLSICNSQLEQSNHIVDNLKSENLLLTSVKDKLKADLSN 804


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 143 WENS---VEGIIKGFER-VAACKLSAAVSTRNQYLKSGLSPEESWNMTSVQLVAVSEAHC 198
           W++S   V G+++G  R V AC  +    +R     SG      WN+ + Q V   E H 
Sbjct: 492 WDSSTGEVVGVLRGHRRGVWACSFNPF--SRQLASGSGDRTIRIWNVDTQQCVQTLEGHT 549

Query: 199 RALILSTYKAEVDRKAQHLSDPLKRV 224
            A++   Y ++  +     +D L +V
Sbjct: 550 GAILKLIYISQGTQVVSAAADGLVKV 575


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 30/134 (22%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 161 KLSAAVSTRNQYLKSGLSPEESWNMTSVQLVA-VSEAHCRALILSTYKAEVDRKAQHLSD 219
           KL +++  RN+   +G   + S + +S Q+   + + +   +    Y +++ RK     +
Sbjct: 249 KLPSSLVNRNEASNTGPMKKFSLSSSSSQITKEIRDINFNCI--GPYLSKIARKLSSDFE 306

Query: 220 PLK--RVMYQLVELYATYWSLQ-KLGDLLLYTSMSESDVQQLRQNYESLLLKIRPNAVGL 276
             +  + + Q+ +  +   SLQ +   L ++T ++E+ VQ  + NY   LL+++   V  
Sbjct: 307 GRRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLVQHTKNNYFQKLLQLQHLLVSH 366

Query: 277 VDG---FDFRDEIL 287
            D    F+  DEI+
Sbjct: 367 ADSFTQFNLLDEII 380


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 166 VSTRNQYLKSGLSPEESWNMTSVQLVAVSEAHCR 199
           + T NQYL+S  S    W++ S  +      HCR
Sbjct: 319 IKTVNQYLQSNPSSPIQWSLISKNMRNRHRHHCR 352


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 221 LKRVMYQLVELYATYWSLQKLGDLLLY---------TSMSESDVQQLRQNYESLLLKIRP 271
           L+ V  ++ E Y   W+L  L  LL Y         T+M  S+ ++  ++ E LLL+I P
Sbjct: 552 LRNVPIEIFEYYNKPWNLLVLYSLLQYENKLTVSQFTAMQHSEYEEPIESKEELLLQIGP 611


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 177  LSPEESWNMTSVQLVAVSEAHC 198
            +S E + N   +QL+ +S+AHC
Sbjct: 1621 ISEEFTINSAGIQLILISDAHC 1642


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 79  GYILSSNLPQIYGLIAAACIYEGENTVLLLQTARSLVKAWEQNARGEKLSST--VSYIAD 136
           GY     LP    +I    I + +    +L +    +  W Q++R + + +T  VS++  
Sbjct: 172 GYYDDFQLPTAEDVIEKPSIPDNDTDDSILPSNDPQLSKWNQDSRNDAMENTLLVSHVLP 231

Query: 137 THPFGKWENSVEGI 150
                +  N+++GI
Sbjct: 232 NISVAQIHNALDGI 245


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,206
Number of Sequences: 5004
Number of extensions: 57245
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 8
length of query: 332
length of database: 2,362,478
effective HSP length: 73
effective length of query: 259
effective length of database: 1,997,186
effective search space: 517271174
effective search space used: 517271174
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)