Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002578-TA|BGIBMGA002578-PA|IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
(332 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 189 3e-48
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 106 3e-23
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 47 2e-05
07_03_1452 - 26629219-26629428,26630113-26630280,26630363-266304... 33 0.32
04_04_1509 - 34074206-34074398,34074506-34074777,34075411-340756... 33 0.42
03_01_0307 + 2414709-2414762,2415769-2415841,2416090-2416154,241... 32 0.74
03_03_0059 + 14149796-14150350,14152303-14152433,14153479-141535... 31 1.7
10_08_0554 - 18728485-18728676,18728778-18728859,18729083-187291... 30 3.0
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601... 29 5.2
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614... 29 6.9
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43... 29 6.9
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 28 9.1
02_05_0098 - 25807993-25808193,25808629-25808710,25808891-258089... 28 9.1
01_01_0363 + 2850954-2853675,2853819-2854225 28 9.1
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 189 bits (460), Expect = 3e-48
Identities = 112/337 (33%), Positives = 175/337 (51%), Gaps = 7/337 (2%)
Query: 1 MDFLTQQHKLFVAIASSHAIRITAAWLWDKYEKVTKDMEAGKSDGLPELHALACCLKAVS 60
+++ TQQ +LF +AS++A R WL Y VT +EA L E HA LKAV+
Sbjct: 330 LNYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTHKLEAKDFSTLQEAHACTAGLKAVT 389
Query: 61 SADASDMVITCSRACGGHGYILSSNLPQIYGLIAAACIYEGENTVLLLQTARSLVKAWEQ 120
++ +D + C + CGGHGY+ SS LP+++ + AC YEG+N VLLLQ AR L+K Q
Sbjct: 390 TSATADGIEECRKLCGGHGYLNSSGLPELFAIYVPACTYEGDNVVLLLQVARFLMKTVSQ 449
Query: 121 NARGEKLSSTVSYIADTHPFGKWENSVEGIIKGFERVAACKLSAAVSTR-----NQYLKS 175
A G++ T +Y+ + + + V A ++ A + R Q +
Sbjct: 450 LASGKQPVGTTAYMGNIQYLMQCKCGVNTAEDWLNPAAIREVFEARALRMAVNCAQNINK 509
Query: 176 GLSPEESWNMTSVQLVAVSEAHCRALILSTYKAEVDRKAQHLSDPLKRVMYQLVELYATY 235
S EE + S L+ V+ AH + +I++ + ++++ + +K + L +YA Y
Sbjct: 510 APSQEEGFYELSPDLLEVAVAHIQLIIVTKFIEKLEQDIP--GEGVKEQLCILCNVYALY 567
Query: 236 WSLQKLGDLLLYTSMSESDVQQLRQNYESLLLKIRPNAVGLVDGFDFRDEILNSTLGAYD 295
+ LGD L S++ + L ++RPNAV LVD F++ D L S LG YD
Sbjct: 568 LVHKHLGDFLSTGSITARQGALANEQLGKLYAQVRPNAVALVDAFNYTDHYLGSVLGRYD 627
Query: 296 GRVYERLMEEALKSPLNAEPVNRSFHQYLKPFMQGKL 332
G VY L EEA K PLN V + ++L+P ++ +L
Sbjct: 628 GNVYPALYEEAWKDPLNDTDVPDGYQEHLRPLLKQQL 664
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 106 bits (254), Expect = 3e-23
Identities = 82/306 (26%), Positives = 145/306 (47%), Gaps = 21/306 (6%)
Query: 1 MDFLTQQHKLFVAIASSHAIRITAAWLWDKYEKVTKDMEAGKSDGLPELHALACCLKAVS 60
+D+ + QHKL +ASS+A +L DKY ++ K + D + ++H L+ LKA
Sbjct: 386 LDYQSHQHKLMPMLASSYAFHFATRYLVDKYSEMKKTND---EDVMADVHVLSSGLKAYI 442
Query: 61 SADASDMVITCSRACGGHGYILSSNLPQIYGLIAAACIYEGENTVLLLQTARSLVKAWEQ 120
++ + + C +CGGHGY + + +EG+NTVLL Q A L+K +++
Sbjct: 443 TSYTAKSISVCRESCGGHGYAAVNRFGALRNDHDIFQTFEGDNTVLLQQVAGDLLKQYQE 502
Query: 121 NARGEKLSSTVSYIADT--------HPF-GKWENSVEGIIKGFE----RVAACKLSAAVS 167
+G LS+T +Y+ D+ +P +WE F+ R +L +V+
Sbjct: 503 KFKGGTLSATWNYLRDSMGTYLSQPNPVTSRWEGEDHLRDPNFQLDAFRYRTSRLLHSVA 562
Query: 168 TRNQYLKSGLSPEESWNMTSVQLVAVSEAHCRALILSTYKAEVDRKAQHLSDPLKRVMYQ 227
R Q L +WN L+ ++E+H ++IL+ + V R D R + +
Sbjct: 563 ARLQKHSKTLGGFGAWNRCLNHLLTLAESHIESVILAKFIEAVKR----CPDEKTRELLK 618
Query: 228 LV-ELYATYWSLQKLGDLLLYTSMSESDVQQLRQNYESLLLKIRPNAVGLVDGFDFRDEI 286
LV +LYA + +G ++ + + + + + L ++R A LVD FD D I
Sbjct: 619 LVCDLYALDRIWKDIGTYRNVDYVAPNKAKAIHKLADYLSYQVRLVAQELVDAFDLPDLI 678
Query: 287 LNSTLG 292
+ + +G
Sbjct: 679 IRAPIG 684
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 47.2 bits (107), Expect = 2e-05
Identities = 70/300 (23%), Positives = 123/300 (41%), Gaps = 27/300 (9%)
Query: 1 MDFLTQQHKLFVAIASSHAIRITAAWLWDKYEKVTKDMEAGKSDGLPELHALACCLKAVS 60
+D+ + Q +L +A A +++A + K V + E KS +H + LKA
Sbjct: 384 LDYPSHQRRLLPLLAK--ACLMSSAGNFMKRMYVKRTPELNKS-----IHIYSSALKATL 436
Query: 61 SADASDMVITCSRACGGHGYILSSNLPQIYGLIAAACIYEGENTVLLLQTARSL------ 114
+ + C ACGG G + + +EG+N VL+ Q +++L
Sbjct: 437 TWQNMTTLQECREACGGQGLKTENRIGIFKAEFDVQSTFEGDNNVLMQQVSKALYAEFLT 496
Query: 115 VKAWEQNARG---EKLSSTVSYIADTHPFGKWENS--VEGIIKGFERVAACKLSAAVSTR 169
K Q +G E L+ I D G +S ++ ER + + VS
Sbjct: 497 AKRKNQPFKGLGLEHLNGPCPVIPDYLTSGTLRSSSFQMDLLCLRERDLLKRFTTEVS-- 554
Query: 170 NQYLKSGLSPEESWNMTSVQLVA-VSEAHCRALILSTYKAEVDRKAQHLSDPLKRVMYQL 228
YL G + E++ M S QL ++ A IL + ++ + + LK ++ L
Sbjct: 555 -NYLAQGENREKAL-MLSYQLAEDLARAFTERTILQIF---LEDEKNIPTGSLKDILGLL 609
Query: 229 VELYATYWSLQKLGDLLLYTSMSESDVQQLRQNYESLLLKIRPNAVGLVDGFDFRDEILN 288
LY + + L Y +S +V R+ +L ++RP+A+ +V F D L+
Sbjct: 610 RSLYVMV-CIDESASFLRYGCLSRENVAAARKEVMTLCSELRPHALAIVSSFGIPDAFLS 668
>07_03_1452 -
26629219-26629428,26630113-26630280,26630363-26630425,
26630499-26630606,26630820-26630932,26631026-26631322,
26631424-26631502,26631733-26631841,26631927-26631968,
26632467-26632597,26633482-26633623,26633713-26633828,
26634121-26634657
Length = 704
Score = 33.1 bits (72), Expect = 0.32
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 212 RKAQHLSDPLKRVMYQLVELYATYWSLQKLGDLLLYTSMSESDVQQLRQNYESLLLKIRP 271
R +Q + PL ++Y+L+ Y + SL+K L +++ + + LR+ +E L P
Sbjct: 490 RNSQQVKIPLDMIIYKLMRAYISSSSLRKSALRALAKTLTANQLFYLREQFELL----GP 545
Query: 272 NAVGLVDGFDFRDEIL-NSTLGAYDGRVYE 300
N G + + + ++ NST D RV +
Sbjct: 546 NKNGYISLQNLKTALVKNSTDAMKDSRVID 575
>04_04_1509 -
34074206-34074398,34074506-34074777,34075411-34075608,
34076092-34076187,34076318-34076500,34076597-34076799,
34076887-34077013,34077098-34077292,34077400-34077540,
34077669-34077812,34077876-34078040,34078776-34078976,
34079049-34079195,34079275-34079427,34079731-34079833,
34079954-34080069,34080168-34080349,34080442-34080541,
34081200-34081527,34081605-34081834,34081979-34082110,
34082787-34082859,34083274-34083338
Length = 1248
Score = 32.7 bits (71), Expect = 0.42
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 160 CKLSAAVSTRNQYLKS---GLSPEESW-NMTSVQLVAVSEAHCRALILSTYKAEVDRKAQ 215
CKL + ++ Q L+S L+ ES + + ++ + + L +KA+VDRK Q
Sbjct: 773 CKLKSRIAELEQKLESRTRSLNVTESTLALRNAEVDTLQNSLKELDELREFKADVDRKNQ 832
Query: 216 HLSDPLKRVMYQLVELYATYWSLQKL 241
++ LKR QL+EL Y Q L
Sbjct: 833 QTAEILKRQGAQLIELENLYKQEQVL 858
>03_01_0307 +
2414709-2414762,2415769-2415841,2416090-2416154,
2416288-2416365,2416880-2416999,2418021-2418091,
2418808-2418900,2419242-2419311,2420236-2420436,
2421345-2421557,2422354-2422440,2422441-2422652,
2422901-2423042,2423424-2423592,2424050-2424126,
2424393-2424563,2425095-2425171,2425299-2425401,
2426066-2426185,2426301-2426444,2426826-2426975,
2427398-2427541,2427816-2427903,2428672-2428799,
2429329-2429533,2429843-2430015,2430174-2430392,
2430490-2430684
Length = 1213
Score = 31.9 bits (69), Expect = 0.74
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 98 IYEGENTVLLLQTARSLVKAWEQNARGEKLSSTVSYIADTHPFGKWENSVEGIIKGFERV 157
I EG+ LL T RS VKA Q K S Y+ +T+ E S I+ ++
Sbjct: 68 IQEGKEMASLLYTYRSCVKALPQLPDSMKHSQADLYL-ETYQVLDLEMSRLREIQRWQAS 126
Query: 158 AACKLSAAVS--TRNQYLKSGLSPEESWNMTSVQLVAVSEAHCR 199
AA KL+A + +R + L +G + W+M + V V H +
Sbjct: 127 AASKLAADMQRFSRPERLVNGPTITHFWSMLKLLDVLVQLDHLK 170
>03_03_0059 +
14149796-14150350,14152303-14152433,14153479-14153520,
14153632-14153740,14154262-14154340,14154437-14154733,
14154820-14154932,14155375-14155482,14155554-14155616,
14155698-14155865,14156283-14156348
Length = 576
Score = 30.7 bits (66), Expect = 1.7
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 212 RKAQHLSDPLKRVMYQLVELYATYWSLQKLGDLLLYTSMSESDVQQLRQNYESLLLKIRP 271
R + + PL ++Y+L+ Y + SL++ L +++ + LR+ +E I P
Sbjct: 410 RGTEEVKLPLDMIIYRLMRAYISSSSLRRAALRALAKTLTTDQIYYLREQFE----LIGP 465
Query: 272 NAVGLVDGFDFRDEIL-NSTLGAYDGRVYE 300
N L+ + + ++ NST D RV +
Sbjct: 466 NKSDLITLQNLKTALMKNSTNAMKDSRVVD 495
>10_08_0554 -
18728485-18728676,18728778-18728859,18729083-18729170,
18729286-18729327,18729747-18729858
Length = 171
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 104 TVLLLQTARSLVKAWEQNARGEKLSSTVSYIADTHPFGKWENS 146
T + + SL+KAWE+N + + + +AD WENS
Sbjct: 56 TTVATEKRISLIKAWEENEKAKADNKAAKKLAD---IASWENS 95
>01_01_0777 -
6017131-6017243,6018069-6018339,6018432-6018617,
6018703-6018735,6018827-6018925,6019042-6019281,
6019747-6020064,6020197-6020254,6020333-6020389,
6020577-6020792,6020885-6021000
Length = 568
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 182 SWNMTSVQLVAVSEAHCRALILSTYKAEVDRKAQHLSDPLKRVMYQLVELYATYWSLQKL 241
SW ++ V + + +IL+ + A +D+K+ L D KR++ +L+ + W L++L
Sbjct: 67 SWKVSLVDNI-IDSFFAIDIILTFFLAYLDQKSYLLVDDPKRIVARLLSM-LRLWRLRRL 124
Query: 242 GDL 244
+L
Sbjct: 125 SEL 127
>10_07_0057 +
12460986-12461036,12461108-12461161,12461420-12461482,
12461666-12461716,12461996-12462057,12462156-12462318,
12462829-12462939,12463029-12463166,12463248-12463322,
12463420-12463540,12464827-12464981,12465080-12465154,
12465270-12465473,12465670-12465786
Length = 479
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 49 LHALACCLKAVSSADASDMVITCSRACGGHGYILSSNLP 87
L +L+CC +A+ S S +TC++A GG S LP
Sbjct: 365 LSSLSCCAEAMVSTFNSMEGMTCNKAEGGISVFPSVRLP 403
>03_01_0050 +
430744-431337,432131-432249,432539-433084,
433177-433483,433605-433773,433861-433960,
435805-436103,436796-436869,437007-437442,437622-437650
Length = 890
Score = 28.7 bits (61), Expect = 6.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 2 DFLTQQHKLFVAIASSHAIRITAAWLWDKYEKVTKDMEAGKSDGLPELHALACCLKAVSS 61
D + H+ A A+ + RI A W + + D + D EL ALA L AVS
Sbjct: 12 DLRAKDHRACSASATDTSSRIIAQWAARRRQLACDDQVIDRRDRDSELLALA-RLHAVSM 70
Query: 62 ADAS 65
DAS
Sbjct: 71 LDAS 74
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 181 ESWNMTSVQLV-AVSEAHCRALILSTYKAEVDRKAQHLSDPLKRVMYQLVELYATYWSL- 238
+S + T V+LV V E + R I+ +A +++ ++L +R++ ++VEL T +L
Sbjct: 360 DSESCTEVKLVDIVKELYERIAIMEKKQAWSNKELKYLQGVNERLLKRVVELKGTVKTLN 419
Query: 239 QKLGDLLLYTSMSE 252
K+ L L S+S+
Sbjct: 420 SKIDPLTLDDSLSQ 433
>02_05_0098 -
25807993-25808193,25808629-25808710,25808891-25808978,
25809062-25809133,25809388-25809556
Length = 203
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 113 SLVKAWEQNARGEKLSSTVSYIADTHPFGKWENSVEGIIK 152
SL+KAWE+N + + + + D WEN+ + +IK
Sbjct: 94 SLIKAWEENEKAKAENRASKKLLD---IISWENTKKAVIK 130
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 28.3 bits (60), Expect = 9.1
Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 12/163 (7%)
Query: 77 GHGYILS-SNLPQIYGLIAAACIYEGENTVLLLQTARSLVKAWEQ-NARGEKLSSTVSYI 134
G +I S +N Q+ L A + G+ + ++ + +L K + + N+ + + + +
Sbjct: 321 GWEFITSLANCSQLQQLDIAENSFIGQLPISIVNLSTTLQKFFLRGNSVSGSIPTDIGNL 380
Query: 135 ADTHPFGKWENSVEGII-KGFERVAACKLSAAVSTRNQYLKSGLSPEESWNMTSVQLVAV 193
S+ G+I + ++A + STR SGL P N+T++ ++A
Sbjct: 381 IGLDTLDLGSTSLSGVIPESIGKLADLAIITLYSTR----LSGLIPSVIGNLTNLNILAA 436
Query: 194 SEAHCRALILSTYKA-----EVDRKAQHLSDPLKRVMYQLVEL 231
+AH I +T +D HL+ + + +++L L
Sbjct: 437 YDAHLEGPIPATLGKLKKLFALDLSINHLNGSVPKEIFELPSL 479
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.131 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,282,957
Number of Sequences: 37544
Number of extensions: 361856
Number of successful extensions: 900
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 890
Number of HSP's gapped (non-prelim): 14
length of query: 332
length of database: 14,793,348
effective HSP length: 82
effective length of query: 250
effective length of database: 11,714,740
effective search space: 2928685000
effective search space used: 2928685000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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