GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002577-TA|BGIBMGA002577-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    28   1.8  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   5.6  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   5.6  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   7.4  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   9.8  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    25   9.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    25   9.8  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 20   DVPEEYLSHKEKYENAIRKSVLMYKVLEEIKDPNETEMQNARTFFRSLLPFAIFKDNSPF 79
            ++ ++YL  K +  N+I  + L    L  + DP+ T M   R   R        K NS  
Sbjct: 1438 ELEDQYLERKRRRRNSISYTELTLDELNTVDDPSSTLMPRKRGRPRK-------KTNSGS 1490

Query: 80   SLHYSMFVPAIIAQANDEQKKYWLKRAMN---TEIIGTYAQTELGHGTFIRGL 129
            SL   +   + +A++  +    + ++A+     EI       +   G F+ GL
Sbjct: 1491 SLSTPLSQESSLARSGRKNTPSYKQKALRRYCMEIFERLYNLQSEDGRFVNGL 1543


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 44   KVLEEIKDPNETEMQNARTFFRSLLPFAIFKDNSPFSLHYSMFVP---AIIAQANDEQKK 100
            K+LE      +TE   A TF +S+   A++    P +  Y  ++     ++ Q +D+Q+ 
Sbjct: 1354 KILEHFDFILDTEA--ASTFPKSIT--AVYSWGKP-NFRYVQYIHRTGTVLVQIDDDQRF 1408

Query: 101  YWLKRAMNTEIIGTYAQTELGHGTFIRGLETTA 133
             WL   ++   +   + T+    T    L+ TA
Sbjct: 1409 LWLPNRLHNSKVSKLSFTKSNKSTLNPNLKETA 1441


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
            Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 22   PEEYLSHKEKYE-NAIRKSV--LMYKVLEEIKDPNETEMQNARTF 63
            P+ Y+  K     +AIRK +    YK LE +K    T   NART+
Sbjct: 1102 PDYYMIIKSPIALDAIRKHINGTFYKTLEAMKSDLMTMFNNARTY 1146


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 6   VVENKVLSVKELFDDVPEEYLSHKEKYENAIRKSVLMYKVLEEIKDPN 53
           +  NK LS+K   D+  +E    K + ENA  K + + K  + I  PN
Sbjct: 752 IAMNKRLSLKSHADNKIDERGKKKIRQENAFDKLLQISKKSKTINKPN 799


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 198 SGIK--LGEI-GAKLGFNTVNNGFLGFDQHRIPRD 229
           +GIK   GEI G+K G NTV   F      R+P D
Sbjct: 333 AGIKDISGEILGSKNGMNTVKAMFEALQSQRLPED 367


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)

Query: 23 EEYLSHKEKYENAIRKSVLMYKVLEEIKDPNETEMQNARTFFRSLL 68
          EEY+SH E+ +N     +       E K     E ++++TF  S L
Sbjct: 17 EEYISHPERNDNQGIVEITDLVFSSESKLTQRKESRDSKTFVPSFL 62


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 66  SLLPFAIFKDNSPFSLHYSMFVPAIIAQANDE 97
           S LP+A+    SP ++HY  FV  +  + ND+
Sbjct: 779 SQLPWALQSYPSPLNIHYEKFVSKVTIE-NDK 809


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,827
Number of Sequences: 5004
Number of extensions: 53605
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 8
length of query: 294
length of database: 2,362,478
effective HSP length: 72
effective length of query: 222
effective length of database: 2,002,190
effective search space: 444486180
effective search space used: 444486180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)