GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002577-TA|BGIBMGA002577-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region
         (294 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   7.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 24  EYLSHKEKYENAIRKSVLMYKVLEEIKDPNETEMQNARTFFRSL 67
           E+LS    +  A+ +  L  + LEE++D  ET   N   F  SL
Sbjct: 145 EFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNPVLFISSL 188


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 24  EYLSHKEKYENAIRKSVLMYKVLEEIKDPNETEMQNARTFFRSL 67
           E+LS    +  A+ +  L  + LEE++D  ET   N   F  SL
Sbjct: 183 EFLSILPIFLYALGEQPLTEQNLEELRDLKETYPFNPVLFISSL 226


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 73  FKDNSPFSLHYSMFVPAIIAQANDEQKKYWLKRAMNTEIIGTYAQ 117
           F D S  ++H S  +  I        ++  + R MNTE +  Y +
Sbjct: 4   FHDMSDGNIHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE 48


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 73  FKDNSPFSLHYSMFVPAIIAQANDEQKKYWLKRAMNTEIIGTYAQ 117
           F D S  ++H S  +  I        ++  + R MNTE +  Y +
Sbjct: 4   FHDMSDGNIHMSDVIEVIETDTKYNGREDQIPREMNTERLLPYVE 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,779
Number of Sequences: 429
Number of extensions: 3349
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 294
length of database: 140,377
effective HSP length: 57
effective length of query: 237
effective length of database: 115,924
effective search space: 27473988
effective search space used: 27473988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)