GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002576-TA|BGIBMGA002576-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR002655|Acyl-CoA oxidase, C-terminal
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   4.7  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   6.2  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 6/106 (5%)

Query: 269 QVLKDGTYVKVASHSKLTYGTMVFVRVMLVNEVAFN----LAKAATIAVREPEPQILDYV 324
           Q+  +G + K  +  ++ YGT     +    E AF     +AK    AV   +     Y+
Sbjct: 69  QIQAEGRFKKEYNGDQVIYGTQFDHMISTFPESAFRAGMRIAKYIDPAVYYDKYARSPYI 128

Query: 325 TQQHKLFVCIATAHALQLSSNWLWKTFSAVLADMRGGNTENLPELH 370
                   C+ T  A    S       S V AD +  +TE+LPE++
Sbjct: 129 MSP--FVACVNTLSAWPAPSRLEDAVISLVEADSQESDTESLPEIN 172


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/56 (21%), Positives = 25/56 (44%)

Query: 490 SIRKRMKNGKAFEDAWELTGVQLVAAAETHCRAVICDVYRKETVRLTANSSPNVKT 545
           ++ ++ KNG+     +      +    E  C+   CD  +++ ++  AN   NV T
Sbjct: 558 ALTEKFKNGQLVRRDYRYWWTPVYVNQELRCKNAYCDSIQRKGIKFPANYFDNVYT 613


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,558
Number of Sequences: 5004
Number of extensions: 124493
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 2
length of query: 654
length of database: 2,362,478
effective HSP length: 77
effective length of query: 577
effective length of database: 1,977,170
effective search space: 1140827090
effective search space used: 1140827090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)