GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002576-TA|BGIBMGA002576-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR002655|Acyl-CoA oxidase, C-terminal
         (654 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF515471-1|AAM61879.1|  225|Anopheles gambiae glutathione S-tran...    28   0.68 
AF491816-1|AAM09542.2|  225|Anopheles gambiae glutathione S-tran...    28   0.68 
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   4.8  

>AF515471-1|AAM61879.1|  225|Anopheles gambiae glutathione
           S-transferase 3-8 protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 172 EEFVIHNPRLTSYKWWAGGLGKTSNYCIVVAQLYTQGKCYGIHPFIVQIRDEDTHVPLPG 231
           EEF+  NP+ T      GG+  T+++ I +  +   G+  G++P  + +R    H  L  
Sbjct: 46  EEFLKVNPQQTIPVLDDGGIVITASHAITIYLVCKYGRDDGLYPSEL-VRRARVHTAL-H 103

Query: 232 VRVGEIGPRMGFNTADNGFLGFDHYRIPRNHMLMKNSQVLKD 273
           +  G I  R+ F      + G  ++   R   + K  ++L+D
Sbjct: 104 LEAGVIFSRLSFLFEPVIYSGKSYFHSDRIEHIRKAYRLLED 145


>AF491816-1|AAM09542.2|  225|Anopheles gambiae glutathione
           S-transferase E7 protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 2/102 (1%)

Query: 172 EEFVIHNPRLTSYKWWAGGLGKTSNYCIVVAQLYTQGKCYGIHPFIVQIRDEDTHVPLPG 231
           EEF+  NP+ T      GG+  T+++ I +  +   G+  G++P  + +R    H  L  
Sbjct: 46  EEFLKVNPQQTIPVLDDGGIVITASHAITIYLVCKYGRDDGLYPSEL-VRRARVHTAL-H 103

Query: 232 VRVGEIGPRMGFNTADNGFLGFDHYRIPRNHMLMKNSQVLKD 273
           +  G I  R+ F      + G  ++   R   + K  ++L+D
Sbjct: 104 LEAGVIFSRLSFLFEPVIYSGKSYFHSDRIEHIRKAYRLLED 145


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 453 YMEEAVVGNKYKWNGSAEGIIKAAYYVAAGKI 484
           Y  EA+  N Y W+ +    +    Y AAG I
Sbjct: 107 YCSEAIYRNGYGWDDANTVFLMGRIYTAAGTI 138


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 674,474
Number of Sequences: 2123
Number of extensions: 28105
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 72
Number of HSP's gapped (non-prelim): 4
length of query: 654
length of database: 516,269
effective HSP length: 68
effective length of query: 586
effective length of database: 371,905
effective search space: 217936330
effective search space used: 217936330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)