GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002575-TA|BGIBMGA002575-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR002655|Acyl-CoA oxidase, C-terminal
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1610.04 |mug99||meiotically upregulated gene Mug99|Schizosac...    30   1.2  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    28   4.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    27   6.3  

>SPAC1610.04 |mug99||meiotically upregulated gene
           Mug99|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 447 KTLKQALSGKAITSTVAYLLDFDKNSNRNWQNTPEGIVIGFQAIAAGLTKAAYDEIEKHE 506
           K++    S  A+ +T A  L  D ++ +N+QN  E    GFQ +   +T  +  EI K  
Sbjct: 209 KSIIPVSSSAALKATKA--LQDDPHNFQNYQNQWEQS--GFQQLRTNMTPTSDLEICKRF 264

Query: 507 KTGLDYEDSWNQASVQLVRASEAHCRVIICEKSW 540
              L    S  +A   LVRA+E    ++I  + W
Sbjct: 265 LNYLCCSFSLTKAEKDLVRATEFSNSMLISIEKW 298


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 536 CEKSWLEAQRLTKSLSPALSKVLLEL 561
           CEKSWLE Q+L K +    +  + +L
Sbjct: 176 CEKSWLEQQKLYKDMEQENASTIQKL 201


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
            Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 19   VQELVHFIDRGEEHTLERK-ELEDLVLSVKELKDETPEEYLSHKERYENAIRKASL 73
            +QE V  +    + +++ K  L D ++ +KE   +  E YL  KE+   A +KA L
Sbjct: 1000 IQEFVQTVLALNQDSIKFKLALRDFLIQLKEFGGDNAELYLEEKEQELAAQQKAQL 1055


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,237
Number of Sequences: 5004
Number of extensions: 128765
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 3
length of query: 665
length of database: 2,362,478
effective HSP length: 77
effective length of query: 588
effective length of database: 1,977,170
effective search space: 1162575960
effective search space used: 1162575960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)