GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002575-TA|BGIBMGA002575-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR002655|Acyl-CoA oxidase, C-terminal
         (665 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           26   0.86 
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           26   0.86 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    24   4.6  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    24   4.6  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           23   8.0  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           23   8.0  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 394 DASIHIDDCRLACGGHGY 411
           D SI +D C L C G GY
Sbjct: 105 DTSIGVDGCDLMCCGRGY 122


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 0.86
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 394 DASIHIDDCRLACGGHGY 411
           D SI +D C L C G GY
Sbjct: 106 DTSIGVDGCDLMCCGRGY 123


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 368 DLDKGNLEQLPELHA-VSCCLKAVCSRDASIHIDD 401
           D+DKGNL   P +   + C L+A    D   ++D+
Sbjct: 58  DVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDE 92


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 368 DLDKGNLEQLPELHA-VSCCLKAVCSRDASIHIDD 401
           D+DKGNL   P +   + C L+A    D   ++D+
Sbjct: 58  DVDKGNLVNEPSITCYMYCLLEAFSLVDDEANVDE 92


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 632 YERLMEEALKSPLNAEPVNTSFHQYLKPFMTA 663
           Y+R     + +PLN  P N  F  +    +TA
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITA 92


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 632 YERLMEEALKSPLNAEPVNTSFHQYLKPFMTA 663
           Y+R     + +PLN  P N  F  +    +TA
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITA 92


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.396 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,329
Number of Sequences: 429
Number of extensions: 8045
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 665
length of database: 140,377
effective HSP length: 62
effective length of query: 603
effective length of database: 113,779
effective search space: 68608737
effective search space used: 68608737
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)