GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002574-TA|BGIBMGA002574-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR002655|Acyl-CoA oxidase, C-terminal
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       32   0.22 
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    29   1.6  
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    29   2.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    28   3.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   6.3  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   6.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   8.4  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   8.4  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    27   8.4  

>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 531 AHCRAILCEMSWAEMQRLSQTLSPNLRKVVLELIEMYIVFWALEKRGELLMYTKIQKDDI 590
           A C      + W EM+   + +   ++ +   L++ +  FW +E   EL +   +    +
Sbjct: 179 ASCALSYMLIGWLEMRFHKKGIDSEVQPI-RALLQKFFYFWGVEWTYELFVLRPLTGQIV 237

Query: 591 AVLQKRYEELLAAVRPNAVGLVDAFDIRDEI 621
             LQK +   L  V+PN + + D  D  ++I
Sbjct: 238 PKLQKGW---LNEVQPNLLSIEDPIDRNNDI 265


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 28  IDGGEEHTLERREVENLVLDIKELKDVVPEEFLSHKE--RYENSIRKACILYEFFRKYSE 85
           I+  +    ++RE+EN+    K  K + PEE++ + +    ++ +   C L EF   +SE
Sbjct: 340 IEDRQREEAKQREIENVQWKPKYFKMIAPEEYILNFDIPNGKSDLEVLCALDEFIPIFSE 399

Query: 86  TN 87
            +
Sbjct: 400 VD 401


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 464 VAYLVDFSKNSNHIWENTPEGIIRGFHAVGAGK-TQAAFEAVQAHEKTGLDFEDAWNRAS 522
           ++++  +     H++   P G+  G++   AGK  Q A   ++    + L  +DA   A+
Sbjct: 134 MSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEAA 193

Query: 523 -VQLVNASEAHCRAILCEMSWAEMQ 546
            +      E + +    EM+W  ++
Sbjct: 194 RILYATHDEENNKEHEIEMTWVGVE 218


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 326 PGEPEPAIIEYVTQQH--KLFIAIATSHAY-RVTGNWLWNTYSKVTSDMGKGNLD 377
           P E  P  IEYV   H  K+F+     H +  VT N +  T  KV    GK   D
Sbjct: 476 PSEDIPKFIEYVRNSHDNKVFLIENLRHMFPYVTKNIISETLGKVAVRKGKSVSD 530


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 3/103 (2%)

Query: 153  LGHGTFLRGLETTATYDPKTEEFVLNSPTLTAYKWWPGGLAHTANHCIVVAQLYTNGKCY 212
            LG   + R  + T   D K   ++  +P L A   W   L + +         Y   K  
Sbjct: 909  LGEYNYGRPAQITGCKDNKLIIWLSTAPGLDAQ--WGRVLVNDSKSKEKYYPSYIVAKLL 966

Query: 213  GVHPFFVQIRDSETHMPLTGVKVGEIGPKLGFNTANNGFLGFN 255
             +HP  +  + + + +   G K   IG  L F+  N   LGF+
Sbjct: 967  NIHPLLLS-KITSSFLISNGTKRENIGLNLKFDARNQKVLGFS 1008


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 353 YRVTGNWLWNTYSKVTSDMGKGNLDQL 379
           Y +T NWL N   K+ S++  G +  L
Sbjct: 406 YTITNNWLENLQQKIPSEVDNGKVSGL 432


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/22 (54%), Positives = 17/22 (77%)

Query: 539  EMSWAEMQRLSQTLSPNLRKVV 560
            EM  AE+QR+SQ+L P + +VV
Sbjct: 1128 EMLNAELQRVSQSLPPQMSRVV 1149


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 5/99 (5%)

Query: 249 NGFLGFNNFRIPRMNMLMKNAQVLKDGTYVKAKSDKLTYGTMVFVRVLIVTD--MAYELS 306
           NGF GF N  + R++ ++ +    K  +     +++   G  +F     ++D  ++ E S
Sbjct: 5   NGFAGFLNTAVNRLSGVLNDTAPTKSQSLKNGVNNEGNRGFSLFRNPRFMSDEKLSSEAS 64

Query: 307 RASTIAVRYAAVRHQSQPKP---GEPEPAIIEYVTQQHK 342
             ST+  + A    QS  K    GE E  +  +  Q+++
Sbjct: 65  SHSTLGQQQARDGRQSPSKEAPFGEGELKLENFENQENE 103


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 539 EMSWAEMQRLSQTLSPNLRKVVLELIEMYIVFWALEKRGELLMYTKIQKDDIAV-LQKRY 597
           E  + ++  L+  + PN+R  V ++  +  VFW  E    LL+      D IA+ LQ  +
Sbjct: 865 EFYFQQLTTLTSIIGPNIRDYVSDIFNLSKVFW--ESTTSLLLVILELIDAIAIALQDEF 922

Query: 598 EELLAAV 604
           +  L  +
Sbjct: 923 KFYLPQI 929


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,044
Number of Sequences: 5004
Number of extensions: 131794
Number of successful extensions: 310
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 11
length of query: 667
length of database: 2,362,478
effective HSP length: 77
effective length of query: 590
effective length of database: 1,977,170
effective search space: 1166530300
effective search space used: 1166530300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)