GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002574-TA|BGIBMGA002574-PA|IPR012258|Acyl-CoA oxidase,
IPR009100|Acyl-CoA dehydrogenase/oxidase, middle and N-terminal,
IPR009075|Acyl-CoA dehydrogenase/oxidase C-terminal,
IPR006091|Acyl-CoA dehydrogenase/oxidase, central region,
IPR002655|Acyl-CoA oxidase, C-terminal
         (667 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   2.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   3.5  
AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           24   4.6  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           24   4.6  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   6.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.1  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
          determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 63 KERYENSIRKACILYEFFRKYSETN 87
          ++ YE   RK  + YE + KYS T+
Sbjct: 50 EQEYEKLKRKMILEYELYIKYSHTH 74


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 29 DGGEEHTLERREVENLVLDIKELKDVVPEEFLSHKERYENSI 70
          DGG+   +E RE+ NLV    E+ D     F  H +R + S+
Sbjct: 32 DGGDYEVVESRELTNLV----EIFDGRGTIFEGHDDREQPSV 69


>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 634 YERLMEEALKSPLNAEPVNRSFHQYLKPLIKA 665
           Y+R     + +PLN  P N+ F  +   +I A
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITA 92


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 634 YERLMEEALKSPLNAEPVNRSFHQYLKPLIKA 665
           Y+R     + +PLN  P N+ F  +   +I A
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITA 92


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 491 AVGAGKTQAAFEAVQAHEK 509
           A+G GKT    +A + HEK
Sbjct: 168 AIGTGKTATPQQAQEVHEK 186


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 265 LMKNAQVLKDGTYVKAKSD-KLTYGTMVFVRVLIVTDMAYELSRASTIAVRYAAVRHQSQ 323
           L+   ++ K  +    + D K+TY  +  V V I + M YE SR             +  
Sbjct: 77  LLTEEKLPKTSSNASVEPDSKVTYSGLWRVCVAISSRMEYECSRIDYFP------NEEYS 130

Query: 324 PKPGEPEPAIIEYVTQQHKLFIAIATS 350
           P P +   AI   VT+    F A ATS
Sbjct: 131 PDPSDSTMAIPYAVTKSAMFFFA-ATS 156


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,599
Number of Sequences: 429
Number of extensions: 8137
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 6
length of query: 667
length of database: 140,377
effective HSP length: 62
effective length of query: 605
effective length of database: 113,779
effective search space: 68836295
effective search space used: 68836295
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)