GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002573-TA|BGIBMGA002573-PA|IPR006091|Acyl-CoA
dehydrogenase/oxidase, central region, IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase, IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    29   2.1  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   2.8  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    28   3.7  
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    28   4.9  
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   6.5  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    27   6.5  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   8.6  
SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyce...    27   8.6  

>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 29  KNRTLERKHIEKLILAQKDELFGGTPEDYLSH 60
           +NR  E K  EKL L+QK++LF   P  Y+ H
Sbjct: 89  RNRITESK--EKLSLSQKEKLFQNLPTVYILH 118


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 591 ALDKLQDLLKYTSISKTDTEQLQERY---EDTLNALRPDAVGLVDAFDIMDEILQSTLGA 647
           AL+KL DL K   +S+   ++L E Y   ++ L + + +   +     I +  L+ +   
Sbjct: 721 ALEKLNDLEKSLVLSERSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHI 780

Query: 648 YDGRVYERLMEEALKSPLNAEPVN 671
            D    E L+  ++K  L A+  N
Sbjct: 781 VDNLKSENLLLTSVKDKLKADLSN 804


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 471 RGLDTLKLT-PTVAYLRTTLTEGFNDKWDNTVEGIIKGFQTVSMRKISECVSC 522
           + +DT+++  PT  Y+ TTLT G +     T    + G Q+  +  I+    C
Sbjct: 168 QSIDTVEVVIPTAGYITTTLTSGSSYPVSTTTLQTVSGTQSGLVEVITPSCGC 220


>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 7   LQNERNKCSFNVRELTEFIDGGKNRTLERKHIEKLILAQKDELFGGTPEDYLSHKEKYER 66
           L +E N+CS  + E+ EF+    N  +E  ++E  I+  +  +   T +DY++ K + E 
Sbjct: 217 LMSENNECSQAIFEIPEFM-SSINECIE--NLEYFIVTDQPSVPPATEKDYVT-KPRIEA 272

Query: 67  AIQTNVI 73
           +I+   I
Sbjct: 273 SIRIKKI 279


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 592 LDKLQDLLKYTSISKTDTEQLQERYEDTLNALRPDAVGLVDAFDIMDEILQS 643
           L+K Q  L+  S  K   +  + R ED L A+   AV    A ++  E+L S
Sbjct: 457 LEKKQISLQPYSFDKNQIDAFRYRMEDALRAVTTVAVSAARAAELKQELLIS 508


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 240 AKMGLNMINNGFIGFNHVRIPRRHLLMKHAQVLEDGTYVKS 280
           +K  LN I + F+GF+ +     H+L+K   V  D  Y+ S
Sbjct: 494 SKDPLNYIMSPFVGFSILTAATIHMLLKFCVVNIDQNYISS 534


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 7  LQNERNKCSFNVRELTEFIDGGKNRTLERKHIEKLILAQKDELFGGTPEDY 57
          + NE NK + N ++ + F +GG    L+R  +  LI  ++      T ED+
Sbjct: 1  MDNENNKNTKNSQQDSSFSEGGIRELLDRLALRSLIEKEEAAAPPKTYEDF 51


>SPBC1778.07 |||methyltransferase N2227 family|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/45 (22%), Positives = 24/45 (53%)

Query: 34 ERKHIEKLILAQKDELFGGTPEDYLSHKEKYERAIQTNVIILKIV 78
          +RK + +L    KD L   +  ++L H  + ++ I+ N ++ + +
Sbjct: 32 KRKSMSRLSFEHKDLLLQDSDNNFLKHLSRIDQCIEQNSVLAEAI 76


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,036
Number of Sequences: 5004
Number of extensions: 119230
Number of successful extensions: 311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 9
length of query: 686
length of database: 2,362,478
effective HSP length: 78
effective length of query: 608
effective length of database: 1,972,166
effective search space: 1199076928
effective search space used: 1199076928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)