Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002573-TA|BGIBMGA002573-PA|IPR006091|Acyl-CoA
dehydrogenase/oxidase, central region, IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase, IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0023 + 227014-227166,227893-228001,228096-228157,228284-22... 383 e-106
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010... 189 7e-48
06_02_0320 - 14347195-14347443,14347573-14347674,14347747-143478... 185 9e-47
01_01_0413 - 3107668-3107796,3107879-3107971,3108082-3108253,310... 41 0.004
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 36 0.14
01_06_0791 - 32026086-32026944,32027044-32027600,32027686-320279... 30 5.3
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 30 7.0
>06_01_0023 +
227014-227166,227893-228001,228096-228157,228284-228493,
228609-228696,228774-228936,229037-229235,229456-229653,
229887-230018,230182-230302,230453-230563,230710-230779,
230880-231063,231137-231346
Length = 669
Score = 383 bits (943), Expect = e-106
Identities = 234/597 (39%), Positives = 328/597 (54%), Gaps = 35/597 (5%)
Query: 100 LLNFVVSREGTPFALHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFI 159
LL V + G LH+ MF+P Q EEQQ +WLP A+ IIG YAQTELGHG+ +
Sbjct: 93 LLRLYVDQPGY-VDLHWGMFVPAIKGQGTEEQQKKWLPLAYRFQIIGCYAQTELGHGSNV 151
Query: 160 RGLETTATYDAATKEFVLHSPTVTSYKWWPGALGHTANYCVVVAQLHTKGQCHGIHSFIV 219
+GLETTAT+D T EFV+HSPT+TS KWWPG LG + + VV A+L T+G+ +GIH FIV
Sbjct: 152 QGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKASTHAVVYARLITEGKDYGIHGFIV 211
Query: 220 QVRDEETHMPLAGIRVGEIGAKMG---LNMINNGFIGFNHVRIPRRHLLMKHAQVLEDGT 276
Q+R E H PL G+ +G+IG K G N ++NG + F+HVRIPR +LM+ +QV ++G
Sbjct: 212 QLRSLEDHSPLPGVTLGDIGGKFGSGAYNSMDNGVLRFDHVRIPRDQMLMRLSQVTKEGK 271
Query: 277 YVKSRNSK-LNYGAMXXXXXXXXXXXXNYLSKAVTIATRFAAVRRQSQLKANEPECQIID 335
YV S K L YG M LS+A IA R++A+R+Q + PE Q+++
Sbjct: 272 YVHSDVPKQLLYGTMVFVRQTIVADASKALSRATCIAVRYSAIRKQFGPQTGGPETQVLN 331
Query: 336 FLTQQHKLFIGIATCHALKMTATKLWDTFNEVQQQLRGGNLERLPEVSHCSSGSHWVKGL 395
+ TQQ +LF +A+ +A + L + +V +L + L E C++G
Sbjct: 332 YKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTHKLEAKDFSTLQEAHACTAG------- 384
Query: 396 ELTGQLHALACCLKAVSTADTAALAEGGRRACGGHGYMRSSGLPQTCAVLDAACTFEGDN 455
LKAV+T+ TA E R+ CGGHGY+ SSGLP+ A+ ACT+EGDN
Sbjct: 385 ------------LKAVTTSATADGIEECRKLCGGHGYLNSSGLPELFAIYVPACTYEGDN 432
Query: 456 TVLLLQTARFLVKVWRGLDTLKL-TPTVAYLRTT--LTE---GFNDKWDNTVEGIIKGFQ 509
VLLLQ ARFL+K L + K T AY+ L + G N D I+ +
Sbjct: 433 VVLLLQVARFLMKTVSQLASGKQPVGTTAYMGNIQYLMQCKCGVNTAEDWLNPAAIR--E 490
Query: 510 TVSMRKISECVSCMAKRMMSGMSQEEAWNMTSVQLVAAAESHCRVIIISYFHEEFVKVSS 569
R + V+C A+ + SQEE + S L+ A +H ++II++ F E+ +
Sbjct: 491 VFEARALRMAVNC-AQNINKAPSQEEGFYELSPDLLEVAVAHIQLIIVTKFIEKLEQ--D 547
Query: 570 SFSPALRRVMKLLVELYTLYWALDKLQDLLKYTSISKTDTEQLQERYEDTLNALRPDAVG 629
++ + +L +Y LY L D L SI+ E+ +RP+AV
Sbjct: 548 IPGEGVKEQLCILCNVYALYLVHKHLGDFLSTGSITARQGALANEQLGKLYAQVRPNAVA 607
Query: 630 LVDAFDIMDEILQSTLGAYDGRVYERLMEEALKSPLNAEPVNRSFHQYLKPLMQGKL 686
LVDAF+ D L S LG YDG VY L EEA K PLN V + ++L+PL++ +L
Sbjct: 608 LVDAFNYTDHYLGSVLGRYDGNVYPALYEEAWKDPLNDTDVPDGYQEHLRPLLKQQL 664
>11_06_0340 -
22500411-22500566,22500660-22500783,22500914-22501080,
22501157-22501336,22501544-22502427,22502728-22502843,
22503745-22504217
Length = 699
Score = 189 bits (460), Expect = 7e-48
Identities = 160/533 (30%), Positives = 250/533 (46%), Gaps = 57/533 (10%)
Query: 141 NCNIIGSYAQTELGHGTFIRGLETTATYDAATKEFVLHSPTVTSYKWWPGALGHTANYCV 200
N + G +A TEL HG+ ++ L+TTAT+D T EF++++P + KWW G +
Sbjct: 182 NLDYPGCFAMTELHHGSNVQALQTTATFDPVTDEFIINTPNDGAIKWWIGNAALHGKFAT 241
Query: 201 VVAQL----HTKG---QCHGIHSFIVQVRDEETHMPLAGIRVGEIGAKMGLNMINNGFIG 253
V A+L KG GIH+FIV +RD +T+ L GI + + G K+GLN ++NG +
Sbjct: 242 VFARLILPLQGKGGDPADMGIHAFIVPIRDLDTNAVLPGIEINDCGHKIGLNGVDNGALR 301
Query: 254 FNHVRIPRRHLLMKHAQVLEDGTYVKS-----RNSKLNYGAMXXXXXXXXXXXXNYLSKA 308
F VRIPR +LL + V DG Y S + G + L +
Sbjct: 302 FRSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRVGIAYSSVGILKVS 361
Query: 309 VTIATRFAAVRRQSQLKANEPECQIIDFLTQQHKLFIGIATCHALKMTATKLWDTFNEVQ 368
VTIA R+A +R+Q +PE ++D+ + QHKL +A+ +A L D ++E++
Sbjct: 362 VTIAVRYALLRQQFG-PPKKPEISVLDYQSHQHKLMPMLASSYAFHFATRYLVDKYSEMK 420
Query: 369 QQLRGGNLERLPEVSHCSSGSHWVKGLELTGQLHALACCLKAVSTADTAALAEGGRRACG 428
+ N E ++ +H L+ LKA T+ TA R +CG
Sbjct: 421 KT----NDE------------------DVMADVHVLSSGLKAYITSYTAKSISVCRESCG 458
Query: 429 GHGYMRSSGLPQTCAVLDAACTFEGDNTVLLLQTARFLVKVWR-GLDTLKLTPTVAYLRT 487
GHGY + D TFEGDNTVLL Q A L+K ++ L+ T YLR
Sbjct: 459 GHGYAAVNRFGALRNDHDIFQTFEGDNTVLLQQVAGDLLKQYQEKFKGGTLSATWNYLRD 518
Query: 488 TL------TEGFNDKWDNTVEGIIKGFQTVSMR-KISECVSCMAKRMM---SGMSQEEAW 537
++ +W+ FQ + R + S + +A R+ + AW
Sbjct: 519 SMGTYLSQPNPVTSRWEGEDHLRDPNFQLDAFRYRTSRLLHSVAARLQKHSKTLGGFGAW 578
Query: 538 NMTSVQLVAAAESHCRVIIISYFHEEFVKVSSSFSPALRRVMKLLVELYTLYWALDKL-Q 596
N L+ AESH +I++ F E V R ++KL+ +LY ALD++ +
Sbjct: 579 NRCLNHLLTLAESHIESVILAKFIE---AVKRCPDEKTRELLKLVCDLY----ALDRIWK 631
Query: 597 DLLKYTSISKTDTEQLQ--ERYEDTLN-ALRPDAVGLVDAFDIMDEILQSTLG 646
D+ Y ++ + + + D L+ +R A LVDAFD+ D I+++ +G
Sbjct: 632 DIGTYRNVDYVAPNKAKAIHKLADYLSYQVRLVAQELVDAFDLPDLIIRAPIG 684
>06_02_0320 -
14347195-14347443,14347573-14347674,14347747-14347851,
14347938-14348084,14348171-14348290,14348743-14348878,
14349198-14349328,14350854-14350928,14351040-14351139,
14351213-14351385,14351474-14351581,14351674-14351791,
14353477-14353970
Length = 685
Score = 185 bits (451), Expect = 9e-47
Identities = 153/544 (28%), Positives = 254/544 (46%), Gaps = 52/544 (9%)
Query: 114 LHFMMFLPVFLSQADEEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAATK 173
+HF ++ + +WL N I G ++ TELGHG+ +RG+ET ATYD T+
Sbjct: 160 VHFFLWGSAIKFLGTKRHHDKWLSDTENYVIKGCFSMTELGHGSNVRGIETVATYDIKTR 219
Query: 174 EFVLHSPTVTSYKWWPGALGHTANYCVVVAQLHTKGQCHGIHSFIVQVRDEETHMPLAGI 233
EFV+++P ++ K+W G + A + +V AQLH G+ G+H+F+ Q+RDE ++ + I
Sbjct: 220 EFVINTPCESAQKYWIGGAANHATHTIVFAQLHINGRNEGVHAFVAQIRDEHENV-MPNI 278
Query: 234 RVGEIGAKMGLNMINNGFIGFNHVRIPRRHLLMKHAQVLEDGTYVKS-RNSKLNYGA-MX 291
++ + G K+GLN ++NG I FN++R+PR +LL A VL DG YV + + + A +
Sbjct: 279 QIADCGHKIGLNGVDNGRIWFNNIRVPRENLLNLVADVLPDGQYVSTIDDPDQRFAAFLS 338
Query: 292 XXXXXXXXXXXN--YLSK-AVTIATRFAAVRRQSQLKANEPECQIIDFLTQQHKLFIGIA 348
N Y+SK V IA R+A RR + + PE ++D+ + Q +L
Sbjct: 339 PLTLGRVNIAVNAVYISKVGVAIAVRYALSRRAFSVTPDGPEMLLLDYPSHQRRLL---- 394
Query: 349 TCHALKMTATKLWDTFNEVQQQLRGGNLERLPEVSHCSSGSHWVKGLELTGQLHALACCL 408
L A + N +++ ++R PE L +H + L
Sbjct: 395 ---PLLAKACLMSSAGNFMKRMY----VKRTPE---------------LNKSIHIYSSAL 432
Query: 409 KAVSTADTAALAEGGRRACGGHGYMRSSGLPQTCAVLDAACTFEGDNTVLLLQT-----A 463
KA T + R ACGG G + + A D TFEGDN VL+ Q A
Sbjct: 433 KATLTWQNMTTLQECREACGGQGLKTENRIGIFKAEFDVQSTFEGDNNVLMQQVSKALYA 492
Query: 464 RFLV-----KVWRGLDTLKLTPTVAYLRTTLTEGFNDKWDNTVEGIIKGFQTVSMRKISE 518
FL + ++GL L + LT G ++ + + + R +E
Sbjct: 493 EFLTAKRKNQPFKGLGLEHLNGPCPVIPDYLTSGTLRSSSFQMDLLCLRERDLLKRFTTE 552
Query: 519 CVSCMAKRMMSGMSQEEAWNMTSVQLVA-AAESHCRVIIISYFHEEFVKVSSSFSPALRR 577
+ +A+ G ++E+A M S QL A + I+ F E+ + + +L+
Sbjct: 553 VSNYLAQ----GENREKAL-MLSYQLAEDLARAFTERTILQIFLEDEKNIPTG---SLKD 604
Query: 578 VMKLLVELYTLYWALDKLQDLLKYTSISKTDTEQLQERYEDTLNALRPDAVGLVDAFDIM 637
++ LL LY + +D+ L+Y +S+ + ++ + LRP A+ +V +F I
Sbjct: 605 ILGLLRSLYVMV-CIDESASFLRYGCLSRENVAAARKEVMTLCSELRPHALAIVSSFGIP 663
Query: 638 DEIL 641
D L
Sbjct: 664 DAFL 667
>01_01_0413 -
3107668-3107796,3107879-3107971,3108082-3108253,
3108341-3108417,3108514-3108673,3108766-3108875,
3109384-3109443,3109545-3109618,3109748-3109871,
3110795-3110872,3111169-3111275,3112572-3112673,
3112800-3112815
Length = 433
Score = 40.7 bits (91), Expect = 0.004
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 18/137 (13%)
Query: 129 EEQQMEWLPRAWNCNIIGSYAQTELGHGTFIRGLETTATYDAATKEFVLHSPTVTSYKWW 188
E Q+ ++LP +G +A TE HG+ L TTAT V + K W
Sbjct: 148 EVQKQKYLPSLAQLTAVGCWALTEPNHGSDASSLITTATK-------VPGGWHIDGQKRW 200
Query: 189 PGALGHTANYCVVVAQLHTKGQCHGIHSFIVQVRDEETHMPLAGIRVGEIGAKMGLNMIN 248
G A+ VV+A+ Q +G FIV+ G++ +I K+GL M+
Sbjct: 201 IGN-STFADVLVVLARNANTKQLNG---FIVR-------KGAPGLKATKIENKIGLRMVQ 249
Query: 249 NGFIGFNHVRIPRRHLL 265
NG I FN V +P L
Sbjct: 250 NGDIVFNKVFVPEEDRL 266
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 35.5 bits (78), Expect = 0.14
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 185 YKWWPGALGHTANYCVV-----VAQLHTKGQCHGIHSFIVQVRDEETHM 228
+K WP G +Y + LHT C GIH F VQ+R +E H+
Sbjct: 560 HKLWPRVAGRFKDYILHPKLNGYRSLHTVIMCEGIHPFEVQIRTKEMHL 608
>01_06_0791 -
32026086-32026944,32027044-32027600,32027686-32027903,
32028171-32028261
Length = 574
Score = 30.3 bits (65), Expect = 5.3
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 508 FQTVSMRKISECVSCMAKRMMSGMSQEEAWNMTSVQLVAAAESHCRVIIISYFHEEFVKV 567
F T +M + + ++ + G W + L AE+ + +I +F+ E K
Sbjct: 421 FGTAAMAAAAVVEAARRRQALGGGGMSAFWLVPQYALAGLAEAFGVIGVIEFFYTELPKS 480
Query: 568 SSSFSPAL 575
+SFS AL
Sbjct: 481 MASFSMAL 488
>06_03_0097 -
16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.9 bits (64), Expect = 7.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 2 NVNKDLQNERNKCSFNVRELTEF----IDGGKNRTLERKHIEKLILAQKDELFGGTPED 56
N + NE + CS+ R+L E+ ID K T++ K +KL + ++ G P D
Sbjct: 447 NTQFNFLNEGDGCSYYARKLWEYQQKYIDQQKPDTVQSKSSDKLTAENRGKILGERPLD 505
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,154,004
Number of Sequences: 37544
Number of extensions: 786453
Number of successful extensions: 1812
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 13
length of query: 686
length of database: 14,793,348
effective HSP length: 87
effective length of query: 599
effective length of database: 11,527,020
effective search space: 6904684980
effective search space used: 6904684980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)
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