GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002573-TA|BGIBMGA002573-PA|IPR006091|Acyl-CoA
dehydrogenase/oxidase, central region, IPR002655|Acyl-CoA oxidase,
C-terminal, IPR012258|Acyl-CoA oxidase, IPR009100|Acyl-CoA
dehydrogenase/oxidase, middle and N-terminal, IPR009075|Acyl-CoA
dehydrogenase/oxidase C-terminal
         (686 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017062-1|AAC47144.2|  649|Anopheles gambiae soluble guanylyl c...    25   6.6  

>AF017062-1|AAC47144.2|  649|Anopheles gambiae soluble guanylyl
           cyclase beta subunit protein.
          Length = 649

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 14/87 (16%)

Query: 577 RVMKLLVELYTLYWALDKLQDLLKYTSISKTDT--------EQLQERYEDTLNALRPDAV 628
           +++K+L ELYT++   D+L D    ++I K +T          L +  E+    +   A+
Sbjct: 524 KIVKMLNELYTIF---DELTDSKSNSNIYKVETVGDKYMAVSGLPDECENHAKCIARLAL 580

Query: 629 GLVD-AFDIM--DEILQSTLGAYDGRV 652
            ++D A ++M   E ++ T+G + G V
Sbjct: 581 DMLDMAKNVMMGTEAMKITIGIHSGEV 607


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.321    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,560
Number of Sequences: 2123
Number of extensions: 26589
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 2
length of query: 686
length of database: 516,269
effective HSP length: 69
effective length of query: 617
effective length of database: 369,782
effective search space: 228155494
effective search space used: 228155494
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)