GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002572-TA|BGIBMGA002572-PA|IPR000196|Ribosomal protein
L19e
         (235 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   8.3  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    21   8.3  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    21   8.3  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 71  NSRQNIRKMIKDGLVIKKPVA 91
           N R   +K +K+GL+  +P++
Sbjct: 303 NRRMKQKKRMKEGLIPPEPIS 323


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 71  NSRQNIRKMIKDGLVIKKPVA 91
           N R   +K +K+GL+  +P++
Sbjct: 92  NRRMKQKKRMKEGLIPPEPIS 112


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 71  NSRQNIRKMIKDGLVIKKPVA 91
           N R   +K +K+GL+  +P++
Sbjct: 92  NRRMKQKKRMKEGLIPPEPIS 112


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,649
Number of Sequences: 317
Number of extensions: 1163
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 114,650
effective HSP length: 55
effective length of query: 180
effective length of database: 97,215
effective search space: 17498700
effective search space used: 17498700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)