GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002572-TA|BGIBMGA002572-PA|IPR000196|Ribosomal protein
L19e
         (235 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X63527-1|CAA45090.1|  196|Homo sapiens ribosomal protein L19 pro...   239   5e-63
S56985-1|AAB25672.1|  196|Homo sapiens ribosomal protein L19 pro...   239   5e-63
BX537435-1|CAD97677.1|  205|Homo sapiens hypothetical protein pr...   239   5e-63
BC095445-1|AAH95445.1|  196|Homo sapiens ribosomal protein L19 p...   239   5e-63
BC066315-1|AAH66315.1|  196|Homo sapiens ribosomal protein L19 p...   239   5e-63
BC062709-1|AAH62709.1|  196|Homo sapiens ribosomal protein L19 p...   239   5e-63
BC013016-1|AAH13016.1|  196|Homo sapiens ribosomal protein L19 p...   239   5e-63
BC000530-1|AAH00530.1|  196|Homo sapiens ribosomal protein L19 p...   239   5e-63
AK223082-1|BAD96802.1|  196|Homo sapiens ribosomal protein L19 v...   239   5e-63
AY157980-1|AAN76335.1|  173|Homo sapiens ribosomal protein L19 p...   210   4e-54

>X63527-1|CAA45090.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>S56985-1|AAB25672.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>BX537435-1|CAD97677.1|  205|Homo sapiens hypothetical protein
           protein.
          Length = 205

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 13  LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 72

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 73  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 132

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 133 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 192

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 193 IIKTLSKEEE 202


>BC095445-1|AAH95445.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>BC066315-1|AAH66315.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>BC062709-1|AAH62709.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>BC013016-1|AAH13016.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>BC000530-1|AAH00530.1|  196|Homo sapiens ribosomal protein L19
           protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>AK223082-1|BAD96802.1|  196|Homo sapiens ribosomal protein L19
           variant protein.
          Length = 196

 Score =  239 bits (586), Expect = 5e-63
 Identities = 112/190 (58%), Positives = 135/190 (71%)

Query: 39  LKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARV 98
           L+LQKRLA+SV+RCGKKKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR 
Sbjct: 4   LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARC 63

Query: 99  RKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSL 158
           RKNT ARRKGRH G GKR+GTANARMP+K  W                +KKIDRH+YHSL
Sbjct: 64  RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSL 123

Query: 159 YMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXX 218
           Y+K KGNVFKNKR+LME+IH+ KA+KAR K+L+DQ                         
Sbjct: 124 YLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEE 183

Query: 219 LLQTFAREDE 228
           +++T ++E+E
Sbjct: 184 IIKTLSKEEE 193


>AY157980-1|AAN76335.1|  173|Homo sapiens ribosomal protein L19
           protein.
          Length = 173

 Score =  210 bits (512), Expect = 4e-54
 Identities = 98/173 (56%), Positives = 118/173 (68%)

Query: 55  KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFG 114
           KKVWLDPNE NEIAN NSRQ IRK+IKDGL+I+KPV VHSRAR RKNT ARRKGRH G G
Sbjct: 1   KKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIG 60

Query: 115 KRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLM 174
           KR+GTANARMP+K  W                +KKIDRH+YHSLY+K KGNVFKNKR+LM
Sbjct: 61  KRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILM 120

Query: 175 EYIHRKKAEKARTKMLSDQXXXXXXXXXXXXXXXXXXXXXXXXXLLQTFARED 227
           E+IH+ KA+KAR K+L+DQ                         +++T ++E+
Sbjct: 121 EHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEE 173


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,191,844
Number of Sequences: 224733
Number of extensions: 657084
Number of successful extensions: 1177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 10
length of query: 235
length of database: 73,234,838
effective HSP length: 88
effective length of query: 147
effective length of database: 53,458,334
effective search space: 7858375098
effective search space used: 7858375098
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 64 (29.9 bits)