GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002572-TA|BGIBMGA002572-PA|IPR000196|Ribosomal protein
L19e
         (235 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   210   5e-55
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.54 
U00044-6|AAA50679.2|  670|Caenorhabditis elegans Bard homolog (t...    30   1.7  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z69787-3|CAA93638.2|  537|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  210 bits (514), Expect = 5e-55
 Identities = 93/158 (58%), Positives = 121/158 (76%)

Query: 36  LRSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 95
           + +L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 96  ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 155
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 156 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 193
           H LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 68   ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 112
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U00044-6|AAA50679.2|  670|Caenorhabditis elegans Bard homolog
           (tumor suppressorgene bard1) protein 1 protein.
          Length = 670

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 7/85 (8%)

Query: 37  RSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTN-SRQNIRKMIKDGLVIKKPVAVHSR 95
           +++ L KR  AS+    KK+  L+P E  E+ +T+ SR+N  K  K     + P++    
Sbjct: 240 KAIPLTKR-QASMSASAKKQPKLEPEEPEEVPSTSRSRKNSIKSDKIERRSQSPMSFG-- 296

Query: 96  ARVRKNTEARRKGRHCGFGKRRGTA 120
               K+   + + R   +G RRG A
Sbjct: 297 ---EKSMSVKSEQRRSSYGTRRGEA 318


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 72  SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 109
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>Z69787-3|CAA93638.2|  537|Caenorhabditis elegans Hypothetical
           protein C44C10.4 protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 55  KKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGF 113
           ++ WLD N I + AN +   NI   IK+    K  +A++  +  R N E  R  R   F
Sbjct: 351 RQCWLDENNIKDDANID---NINMRIKEA-TTKHTLALNIESEARLNWEKLRVMRSARF 405


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,146,742
Number of Sequences: 27539
Number of extensions: 128081
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 5
length of query: 235
length of database: 12,573,161
effective HSP length: 79
effective length of query: 156
effective length of database: 10,397,580
effective search space: 1622022480
effective search space used: 1622022480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)