GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002570-TA|BGIBMGA002570-PA|IPR007676|Ribophorin I
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0387 + 13396158-13396271,13396390-13396434,13397004-133976...   313   2e-85
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     32   0.84 
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244...    29   5.9  
04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    29   7.8  

>05_03_0387 +
           13396158-13396271,13396390-13396434,13397004-13397632,
           13397727-13397874,13397971-13398147,13398527-13398595,
           13398699-13398788,13399000-13399158,13399663-13399753,
           13399917-13400008,13400009-13400233,13400394-13400585
          Length = 676

 Score =  313 bits (769), Expect = 2e-85
 Identities = 161/448 (35%), Positives = 257/448 (57%), Gaps = 10/448 (2%)

Query: 20  SASVDTISSDIKLKNVDRTVDISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAF 79
           +AS  T  +D+ +   DR VD+++ +V+V++ + +ENSG  +V  FL A       NLA 
Sbjct: 20  AASTPTARADLVVTRADRKVDLTSHIVRVLTSLKVENSGPEAVSQFLLAFPNVQAKNLAA 79

Query: 80  IGAKDSNSKD------LRLAETTVKGYD-YVKFWRVELKEPLNAGATVNVVVETVFTKAL 132
           I A  +  K       L +      G    + F+   L +PL  G T+++ V TVFT ++
Sbjct: 80  IRAFGTEEKVKGPSMVLPIEVVQPSGVPPELTFFSASLSKPLEKGKTLHLDVLTVFTHSV 139

Query: 133 QPYPTAITQQEDQFVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTII 192
           QP+P  ITQ E Q V Y  +    SPY    Q  S+ L    VES+TK       +  + 
Sbjct: 140 QPFPEEITQAESQLVVYQDSAQYLSPYPVKVQTLSIRLPGGRVESYTKYPNTKLAESELK 199

Query: 193 YGPYANVGPFTEKELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKG 252
           YGPY ++ PF+   + +HY+NN+PF     V R IE+SHWGN+ I E   I H GAKLKG
Sbjct: 200 YGPYEDLPPFSYSPMVVHYENNNPFAVAKEVIREIEISHWGNVQITEHYNIAHGGAKLKG 259

Query: 253 PFSRYDYQ-QDHHSGPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRP 311
            FSR DYQ + +  G +S R     LP  A  +YYRD  GNISTS++       +L++ P
Sbjct: 260 EFSRIDYQSRPYIRGVSSFRHLIARLPPRAHSIYYRDEIGNISTSHLWSDSKKTQLEVEP 319

Query: 312 RYPLFGGWRTHYTLGYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGS 371
           R+PLFGGW+T +T+GY +P  +++++S  +  L + +     +++ +++L+ K++LPEGS
Sbjct: 320 RFPLFGGWQTTFTIGYGLPLQDFVFNSDGKRFLNI-TFGSPVEEILIEKLIVKVVLPEGS 378

Query: 372 TGIKLNIPYSVTRLPDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQE 431
             I +++P+  T+    + +++LD  GRPV+   K +++  H   FQ+ Y F  + +L+E
Sbjct: 379 KDIDISVPFP-TKQEQEVKYSHLDISGRPVVVLEKLDVIPEHNLYFQVYYRFNNISLLRE 437

Query: 432 PLLVVGFLYTLFLCVIIYVRLDFSIHKS 459
           P++++   + LF+  I+Y+R D SI K+
Sbjct: 438 PMMLITGFFLLFMACIVYMRTDMSISKN 465


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 32.3 bits (70), Expect = 0.84
 Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 4/62 (6%)

Query: 40   DISTQLVKVVSKIVLENSGKSSVKHFLFAVEEAAKNNLAFIGAKDSNSKDLRLAETTVKG 99
            ++S + ++    I  E+  +    H      E+++N++ F   +D+N  DL +A++ ++G
Sbjct: 1021 NVSLESLETTENITSEDENEIKAGHLC----ESSENDIRFPEKEDTNKIDLEVADSVMEG 1076

Query: 100  YD 101
            YD
Sbjct: 1077 YD 1078


>04_04_1218 - 31822915-31823141,31823418-31823832,31824090-31824440,
            31825391-31825549,31825965-31826093,31826257-31826460,
            31827200-31827412,31827547-31830912,31830999-31831150,
            31831912-31832407,31832646-31833456,31833537-31834728,
            31834856-31834922
          Length = 2593

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%)

Query: 212  KNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVR 271
            ++NS  L  +R    + +S +G    E  +EI H   +++    +     DH  G A+V+
Sbjct: 1895 QHNSSLLDESRELGFLLLSVYGATLSETDLEILHLMNEIESSECKAITDVDHLWGKAAVK 1954

Query: 272  AYKTL-LPASASDVYYRDTNGNISTSNMKVKKDSVELD 308
              + L L  SASD +  + N  IS     + ++++ +D
Sbjct: 1955 FREELKLEFSASDTHKME-NAEISDRRRSLFRENIPID 1991


>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 30/151 (19%)

Query: 280 SASDVYYRDTNGNISTSNMKVKKDSVELDLR--PRYPLFGGWR------THY------TL 325
           +A  +YY  +  ++S  +  VK  ++ LD     +   FG  R      TH       T 
Sbjct: 427 AAGALYYLHSAASVSVLHRDVKSSNILLDSNYTAKVSDFGASRLIPNDQTHVFTNIQGTF 486

Query: 326 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 385
           GY  P Y   YH+G+   L  +S  + F  + ++ L+ K  + +  TG K N+       
Sbjct: 487 GYLDPEY---YHTGH---LNEKSDVYSFGVVLLELLLRKQPIFDDGTGTKKNL------- 533

Query: 386 PDSLHFTYLDTKGRPVISFIKKNIVENHIQD 416
             S++F   + KG+P+   +   +++  I+D
Sbjct: 534 --SIYFLS-EIKGKPITEIVAPEVIKEAIED 561


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,980
Number of Sequences: 37544
Number of extensions: 475722
Number of successful extensions: 968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 4
length of query: 463
length of database: 14,793,348
effective HSP length: 85
effective length of query: 378
effective length of database: 11,602,108
effective search space: 4385596824
effective search space used: 4385596824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)