Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002570-TA|BGIBMGA002570-PA|IPR007676|Ribophorin I
(463 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for ... 491 e-138
CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein. 491 e-138
BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein. 491 e-138
AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant pr... 489 e-137
BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I... 485 e-136
>Y00281-1|CAA68392.1| 607|Homo sapiens protein ( Human mRNA for
ribophorin I. ).
Length = 607
Score = 491 bits (1210), Expect = e-138
Identities = 230/433 (53%), Positives = 313/433 (72%), Gaps = 8/433 (1%)
Query: 33 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 85
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 86 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 145
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 146 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFTEK 205
FV + GN Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V +++
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQD 212
Query: 206 ELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHS 265
+HY+NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ S
Sbjct: 213 TFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDS 272
Query: 266 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTL 325
G +S+R++KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +
Sbjct: 273 GISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIV 332
Query: 326 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 385
GYN+PSYEYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R
Sbjct: 333 GYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRA 392
Query: 386 PDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLC 445
PD LH+TYLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF
Sbjct: 393 PDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFT 452
Query: 446 VIIYVRLDFSIHK 458
VIIYVRLDFSI K
Sbjct: 453 VIIYVRLDFSITK 465
>CR456742-1|CAG33023.1| 607|Homo sapiens RPN1 protein.
Length = 607
Score = 491 bits (1210), Expect = e-138
Identities = 230/433 (53%), Positives = 313/433 (72%), Gaps = 8/433 (1%)
Query: 33 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 85
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 86 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 145
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 146 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFTEK 205
FV + GN Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V +++
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQD 212
Query: 206 ELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHS 265
+HY+NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ S
Sbjct: 213 TFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDS 272
Query: 266 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTL 325
G +S+R++KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +
Sbjct: 273 GISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIV 332
Query: 326 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 385
GYN+PSYEYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R
Sbjct: 333 GYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRA 392
Query: 386 PDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLC 445
PD LH+TYLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF
Sbjct: 393 PDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFT 452
Query: 446 VIIYVRLDFSIHK 458
VIIYVRLDFSI K
Sbjct: 453 VIIYVRLDFSITK 465
>BC010839-1|AAH10839.1| 607|Homo sapiens ribophorin I protein.
Length = 607
Score = 491 bits (1210), Expect = e-138
Identities = 230/433 (53%), Positives = 313/433 (72%), Gaps = 8/433 (1%)
Query: 33 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 85
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 86 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 145
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 146 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFTEK 205
FV + GN Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V +++
Sbjct: 153 FVVFEGNHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQD 212
Query: 206 ELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHS 265
+HY+NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ S
Sbjct: 213 TFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDS 272
Query: 266 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTL 325
G +S+R++KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +
Sbjct: 273 GISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIV 332
Query: 326 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 385
GYN+PSYEYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R
Sbjct: 333 GYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRA 392
Query: 386 PDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLC 445
PD LH+TYLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF
Sbjct: 393 PDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFT 452
Query: 446 VIIYVRLDFSIHK 458
VIIYVRLDFSI K
Sbjct: 453 VIIYVRLDFSITK 465
>AK223595-1|BAD97315.1| 607|Homo sapiens ribophorin I variant
protein.
Length = 607
Score = 489 bits (1205), Expect = e-137
Identities = 229/433 (52%), Positives = 312/433 (72%), Gaps = 8/433 (1%)
Query: 33 KNVDRTVDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DS 85
++V RTVD+S+ L KV +++VL + G S FL A+E + LA +G + D
Sbjct: 34 EDVKRTVDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDE 93
Query: 86 NSKDLRLAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQ 145
+L + ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E Q
Sbjct: 94 EENNLEVRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQ 152
Query: 146 FVKYVGNLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFTEK 205
FV + GN Y Y PY T TQ V L ++ VES+TK+ ++ + + YGP+ +V +++
Sbjct: 153 FVVFEGNHYFYPPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQD 212
Query: 206 ELSIHYKNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHS 265
+HY+NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ S
Sbjct: 213 TFKVHYENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDS 272
Query: 266 GPASVRAYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTL 325
G +S+R++KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +
Sbjct: 273 GISSIRSFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIV 332
Query: 326 GYNVPSYEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRL 385
GYN+PSYEYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R
Sbjct: 333 GYNLPSYEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRA 392
Query: 386 PDSLHFTYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLC 445
PD LH+TYLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF
Sbjct: 393 PDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFT 452
Query: 446 VIIYVRLDFSIHK 458
VIIYVRLDFSI K
Sbjct: 453 VIIYVRLDFSITK 465
>BC007995-1|AAH07995.1| 568|Homo sapiens Similar to ribophorin I
protein.
Length = 568
Score = 485 bits (1195), Expect = e-136
Identities = 227/427 (53%), Positives = 308/427 (72%), Gaps = 8/427 (1%)
Query: 39 VDISTQLVKVVSKIVLENSGKSSVKH---FLFAVEEAAKNNLAFIGAK----DSNSKDLR 91
VD+S+ L KV +++VL + G S FL A+E + LA +G + D +L
Sbjct: 1 VDLSSHLAKVTAEVVLAHLGGGSTSRATSFLLALEPELEARLAHLGVQVKGEDEEENNLE 60
Query: 92 LAETTVKGYDYVKFWRVELKEPLNAGATVNVVVETVFTKALQPYPTAITQQEDQFVKYVG 151
+ ET +KG +F+ V+L L+ GA ++V+VETV+T L PYPT ITQ E QFV + G
Sbjct: 61 VRETKIKGKSG-RFFTVKLPVALDPGAKISVIVETVYTHVLHPYPTQITQSEKQFVVFEG 119
Query: 152 NLYTYSPYYTSTQKTSVILNTKTVESFTKVKPFSQVDGTIIYGPYANVGPFTEKELSIHY 211
N Y YSPY T TQ V L ++ VES+TK+ ++ + + YGP+ +V +++ +HY
Sbjct: 120 NHYFYSPYPTKTQTMRVKLASRNVESYTKLGNPTRSEDLLDYGPFRDVPAYSQDTFKVHY 179
Query: 212 KNNSPFLTVTRVERLIEVSHWGNIAIEEVIEIEHTGAKLKGPFSRYDYQQDHHSGPASVR 271
+NNSPFLT+T + R+IEVSHWGNIA+EE ++++HTGA LKGPFSRYDYQ+ SG +S+R
Sbjct: 180 ENNSPFLTITSMTRVIEVSHWGNIAVEENVDLKHTGAVLKGPFSRYDYQRQPDSGISSIR 239
Query: 272 AYKTLLPASASDVYYRDTNGNISTSNMKVKKDSVELDLRPRYPLFGGWRTHYTLGYNVPS 331
++KT+LPA+A DVYYRD GN+STS++ + DSVE+++RPR+PLFGGW+THY +GYN+PS
Sbjct: 240 SFKTILPAAAQDVYYRDEIGNVSTSHLLILDDSVEMEIRPRFPLFGGWKTHYIVGYNLPS 299
Query: 332 YEYLYHSGNEYLLKMRSIDHIFDDMQVDELVTKIILPEGSTGIKLNIPYSVTRLPDSLHF 391
YEYLY+ G++Y LKMR +DH+FD+ +D L KIILPEG+ I+++ PY ++R PD LH+
Sbjct: 300 YEYLYNLGDQYALKMRFVDHVFDEQVIDSLTVKIILPEGAKNIEIDSPYEISRAPDELHY 359
Query: 392 TYLDTKGRPVISFIKKNIVENHIQDFQIRYTFPRLLMLQEPLLVVGFLYTLFLCVIIYVR 451
TYLDT GRPVI KKN+VE HIQD + YTF ++LMLQEPLLVV Y LF VIIYVR
Sbjct: 360 TYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKVLMLQEPLLVVAAFYILFFTVIIYVR 419
Query: 452 LDFSIHK 458
LDFSI K
Sbjct: 420 LDFSITK 426
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.135 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,553,008
Number of Sequences: 224733
Number of extensions: 2570158
Number of successful extensions: 4863
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4853
Number of HSP's gapped (non-prelim): 5
length of query: 463
length of database: 73,234,838
effective HSP length: 93
effective length of query: 370
effective length of database: 52,334,669
effective search space: 19363827530
effective search space used: 19363827530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)
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